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SCNpilot_expt_1000_bf_scaffold_8565_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 5090..6265

Top 3 Functional Annotations

Value Algorithm Source
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 391.0
  • Bit_score: 705
  • Evalue 4.40e-200
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6S2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.6
  • Coverage: 391.0
  • Bit_score: 703
  • Evalue 1.20e-199
  • rbh
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase; K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] similarity KEGG
DB: KEGG
  • Identity: 78.0
  • Coverage: 391.0
  • Bit_score: 610
  • Evalue 3.30e-172
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1176
ATGGCTCCCGACGCGCGGCAGAAGCGCCGCATCACCGTTCTCGGCTCCACAGGCTCCATCGGCACCAGCACGCTCGACGTGGTGCGCCAGCTCGGCGGACGCGAGCGCTACGAGGTGCTGGCGCTGACCGGCAACGGCAATGTGGAGCTCCTCGCCGCGCAGGCCAGGGATTGCGGCGCGCGGATGGCGGTGACGGCGGACGAGAGCCGCTACGGCGCGCTCAAGGATGCGCTTTCCGGCAGCGGCATCGCGGCGGCGGCCGGGCGCGAGGCGCTGCTGGAGGCGGCCTCGGCCGATGCGGACTGGGTGATGGCGGCCATCGTCGGCACGGCCGGCCTTGCGCCGACGCTTGCCGCGGCCAAGAAAGGCGCGGATATCGCGCTTGCCAACAAGGAATGCCTCGTCTCGGCAGGCGACCTCTTCGTCAAGGCCGTTGCGGCAGGCGGCGGGCGGCTCATTCCCGTCGACAGCGAGCACAGCGCGATCTTCCAGGCGCTGGAGGACGACCAGCGCCACGCCGTCGAGCGCATCGTGCTGACGGCCTCGGGCGGCCCTTTCCGCACCTGGAGCCGCGACGAGATGGCGGGCGTCACCGCCGACATTGCGCGCGCCCATCCCAACTGGTCGATGGGCCTGAAAATTTCGATCGGCAGCGCCTCGATGTTCAACAAGGCGCTGGAGATGATCGAGGCGAAGCATCTCTTCGACGTCAGGCCGGACCAGATCGAGGTGATCGTCCATCCGCAGTCGATCGTCCATTCCATGGTGGGCTATGTCGACGGCTCGGTGCTGGCGCAGCTCGGCGCGCCCGACATGCGCACGGCCATCGGCTATGCGCTGACCTATCCCGCGCGTGCGCCGCTCAATGTCGACCGGCTGGATTTCGCCAGGCTGGCACGGCTCGATTTCGAGGCGCCGGACGAGGTGCGCTTCCCGGCGCTTCGGCTTGCCCGCACGGCACTCGAACGCGGCGGGTTGCAGGGTGCGGTGATGAATGCCGCCGAGGAGGTGGCGTTCCATGCCTTCGTCGCCGGGCGCATCGGCTTCCTTGCGATGGCCGACATTGCCGAGGAGGTGATGGACAGGCTCTCGCACCTGCCGCCGGCGTCCTCCATGGACGATGTCTTCGCCGCGGACGAAGAAGCCCGGCGGGTGGCCGCCGGGCTCATCGGATAG
PROTEIN sequence
Length: 392
MAPDARQKRRITVLGSTGSIGTSTLDVVRQLGGRERYEVLALTGNGNVELLAAQARDCGARMAVTADESRYGALKDALSGSGIAAAAGREALLEAASADADWVMAAIVGTAGLAPTLAAAKKGADIALANKECLVSAGDLFVKAVAAGGGRLIPVDSEHSAIFQALEDDQRHAVERIVLTASGGPFRTWSRDEMAGVTADIARAHPNWSMGLKISIGSASMFNKALEMIEAKHLFDVRPDQIEVIVHPQSIVHSMVGYVDGSVLAQLGAPDMRTAIGYALTYPARAPLNVDRLDFARLARLDFEAPDEVRFPALRLARTALERGGLQGAVMNAAEEVAFHAFVAGRIGFLAMADIAEEVMDRLSHLPPASSMDDVFAADEEARRVAAGLIG*