ggKbase home page
This organism can only be binned in the context of its binning project GWB1. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

SCNpilot_expt_1000_bf_scaffold_8565_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8565_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45..1193)
DNA (1149bp) protein (383aa)
Putative cobalamin synthesis protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BYG9_9RHIZ rbh
Putative GTPase {ECO:0000313|EMBL:EYR79599.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobalamin synthesis protein rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1208..2320)
DNA (1113bp) protein (371aa)
D-alanyl-D-alanine carboxypeptidase DacF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EGI2_9RHIZ rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EYR79600.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4) rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2452..3624
DNA (1173bp) protein (391aa)
Hippurate hydrolase HipO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWD5_9RHIZ rbh
Hippurate hydrolase HipO {ECO:0000313|EMBL:EYR79601.1}; EC=3.5.1.32 {ECO:0000313|EMBL:EYR79601.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hipO1; Putative hippurate hydrolase (EC:3.5.1.32) rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_trna_1
unknown

Not on your lists

3761..3834
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_8565_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3857..4078)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYH4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79602.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8565_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4222..4665)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D296_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79603.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8565_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5090..6265
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6S2_9RHIZ rbh
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase; K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6286..7500)
DNA (1215bp) protein (405aa)
5-aminolevulinate synthase HemA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXY5_9RHIZ rbh
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-aminolevulinate synthase; K00643 5-aminolevulinate synthase [EC:2.3.1.37] rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7744..8541)
DNA (798bp) protein (266aa)
Carbon monoxide dehydrogenase medium chain n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHU1_9RHIZ rbh
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL {ECO:0000313|EMBL:EYR79606.1}; EC=1.2.99.2 {ECO:0000313|EMBL:EYR79606.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
carbon monoxide dehydrogenase medium subunit transmembrane protein (EC:1.2.99.2) rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_9
unknown

Not on your lists

9098..9256
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8565_curated_10
unknown

Not on your lists

9263..9508
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8565_curated_11
unknown

Not on your lists

10607..10783
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8565_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10990..11481)
DNA (492bp) protein (164aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS {ECO:0000313|EMBL:EYR79607.1}; EC=1.2.99.2 {ECO:0000313|EMBL:EYR79607.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
coxS; putative carbon-monoxide dehydrogenase small subunit; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Putative carbon-monoxide dehydrogenase small subunit n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A1L0_RHIFH
SCNpilot_expt_1000_bf_scaffold_8565_curated_13
unknown

Not on your lists

comp(12844..12963)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8565_curated_14
unknown

Not on your lists

comp(13021..13233)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8565_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13347..14378
DNA (1032bp) protein (344aa)
Putative cell surface protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU74_9RHIZ rbh
Putative cell surface protein {ECO:0000313|EMBL:EYR79609.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cell surface protein rbh
SCNpilot_expt_1000_bf_scaffold_8565_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14480..14611
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D371_9RHIZ
Autotransporter secretion inner membrane protein TamB {ECO:0000313|EMBL:EYR79610.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 17 items

View Taxonomy