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SCNpilot_expt_1000_bf_scaffold_7693_curated_16

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(11435..12409)

Top 3 Functional Annotations

Value Algorithm Source
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03718.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.7
  • Coverage: 316.0
  • Bit_score: 325
  • Evalue 1.00e-85
membrane protein id=2483815 bin=GWF1_Rhodobacteraceae_65_7 species=Oceanicola sp. S124 genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + similarity UNIREF
DB: UNIREF100
  • Identity: 56.7
  • Coverage: 323.0
  • Bit_score: 317
  • Evalue 1.50e-83
  • rbh
membrane protein similarity KEGG
DB: KEGG
  • Identity: 44.1
  • Coverage: 152.0
  • Bit_score: 99
  • Evalue 1.60e-18

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 975
GTGCGCCAGACCGTCTTCCTCGCACTGCAACTGTTTGTGGCTGCGGCCCTTGCCTTGGCGCTCGCCCGGTGGCTCGATCTGGCCAATCCCTACTGGGCGGCGATGCCGGTCTGGGTGGTGCAGCAGGCCTATCGCGAGGATCTGGTTCTGCGCGCCGTGCTGCGCATCATCGGCACGCTGGCCGGTGCCGCCCTTGCGCTTGCCGTCGTCCGGCTTGGGCTCCCCGACGTCTTGACCGCGCTCGTTCTTGCCCTCGGCGTGGGATGTGCTGCGGCTCTTGCCTACTGGATCGGCACGGTCATGAGCTACGGCGCCTTTATGGCCGGCGTGACGCTCTTCGTCGTGCTTCTTCCAGGCTTTTCCGGTTTCTCCGCCGCGACGGGGATCGACCCTGTCGCAGCGGCGGTGGATCGCATTTTCTGCACCCTGATCGGAGTGGCTTGCGTGACGGCAGCCACCTTCGCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTTCGCCTATTGCTGCGCCATGACGGTTTGCGCCGCCGCCGCTGTGATCGCTTTCCCGCGCTTCGACATTCTCGCCGGCGCAATGACGCTGATCGTCTATTCCATGATCCTTTCCAGCGCACCGGATCCGCGGCCGATCGCATCGTTGCTCGTGCCGGCCGTCCTGCTGGGCGTTTGCGCCTCCATCGCCTATCTCTTCCTGCTGAAGAGTGCGGGGGCTGAGGAGAGGCAGGCCGCTGTCCTTCTCACAGCAGGCTTCCTGCTCGCCGGCGCCTTCCTGCGTGCCTGGCCTCGCACGGCATCCTACGGCCTCGACGCCAATATGTGCTTCCTGATCGTCTCGGAAGTGGGCGCCTGGCGTCATGGCACCGCCGAGGTGACGCTGGCAGGCATTGCGGTGGTGTGCGCTGCCGCCGCGGTCAGCGTCTCCGGCCGCCTGCTGCCCGCGGAAAGGCGCTAG
PROTEIN sequence
Length: 325
VRQTVFLALQLFVAAALALALARWLDLANPYWAAMPVWVVQQAYREDLVLRAVLRIIGTLAGAALALAVVRLGLPDVLTALVLALGVGCAAALAYWIGTVMSYGAFMAGVTLFVVLLPGFSGFSAATGIDPVAAAVDRIFCTLIGVACVTAATFAXXXXXXXXXXXXXXXXRFAYCCAMTVCAAAAVIAFPRFDILAGAMTLIVYSMILSSAPDPRPIASLLVPAVLLGVCASIAYLFLLKSAGAEERQAAVLLTAGFLLAGAFLRAWPRTASYGLDANMCFLIVSEVGAWRHGTAEVTLAGIAVVCAAAAVSVSGRLLPAERR*