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SCNpilot_expt_1000_bf_scaffold_7693_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7693_curated_1
Halomonas sp. KO116, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..209)
DNA (207bp) protein (69aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AJY48715.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AJY48715.1};; TaxID=1504981 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. KO116.;"
3-oxoacyl-ACP reductase n=1 Tax=Kushneria aurantia RepID=UPI00035EA4EF
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
SCNpilot_expt_1000_bf_scaffold_7693_curated_2
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(209..703)
DNA (495bp) protein (165aa)
aromatic-ring-hydroxylating dioxygenase, beta subunit id=2483825 bin=GWF1_Rhodobacteraceae_65_7 species=Halomonas sp. KM-1 genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
Aromatic-ring-hydroxylating dioxygenase, beta subunit
SCNpilot_expt_1000_bf_scaffold_7693_curated_3
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(700..1992)
DNA (1293bp) protein (431aa)
Ring hydroxylating dioxygenase, Rieske (2Fe-2S) protein id=2483827 bin=GWF1_Rhodobacteraceae_65_7 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Tax=GWF1_Rhodobacteraceae_65_7_curated
aromatic-ring-hydroxylating dioxygenase, alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_7693_curated_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1992..2354)
DNA (363bp) protein (121aa)
Putative uncharacterized protein id=2483832 bin=GWF1_Rhodobacteraceae_65_7 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7693_curated_5
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2378..3172)
DNA (795bp) protein (265aa)
acyl-CoA dehydrogenase n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003661EBB rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KEP71130.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7693_curated_6
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3498..3815)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003615BAC
Tax=GWF1_Rhodobacteraceae_65_7_curated
putative amidase
SCNpilot_expt_1000_bf_scaffold_7693_curated_7
Arundo donax, Arundo, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

3926..4438
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:JAF47931.1}; TaxID=35708 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Arundinoideae; Arundineae; Arundo.;" source="Arundo donax (Giant reed) (Donax arundinaceus).;"
Putative uncharacterized protein n=1 Tax=Bacillus sp. BT1B_CT2 RepID=E5W874_9BACI
SCNpilot_expt_1000_bf_scaffold_7693_curated_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5116..5682
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=2483842 bin=GWF1_Rhodobacteraceae_65_7 species=Azospirillum sp. genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Tax=GWF1_Rhodobacteraceae_65_7_curated
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7693_curated_9
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5724..5954)
DNA (231bp) protein (77aa)
Histone deacetylase-like amidohydrolase {ECO:0000313|EMBL:CDF81559.1}; EC=3.5.1.- {ECO:0000313|EMBL:CDF81559.1};; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
putative acetylpolyamine aminohydrolase
Putative acetylpolyamine aminohydrolase n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XNI3_PSEDE
SCNpilot_expt_1000_bf_scaffold_7693_curated_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5988..7334)
DNA (1347bp) protein (449aa)
phenylacetaldehyde dehydrogenase; K00146 phenylacetaldehyde dehydrogenase [EC:1.2.1.39] rbh
Phenylacetaldehyde dehydrogenase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P196_AZOS1 rbh
Phenylacetaldehyde dehydrogenase {ECO:0000313|EMBL:BAI74425.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_7693_curated_11
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7582..8442)
DNA (861bp) protein (287aa)
6-chlorohydroxyquinol-1,2-dioxygenase n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036CFF4F rbh
Tax=GWF1_Rhodobacteraceae_65_7_curated
hydroxyquinol 1,2-dioxygenase; K03381 catechol 1,2-dioxygenase [EC:1.13.11.1] rbh
SCNpilot_expt_1000_bf_scaffold_7693_curated_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8439..9518)
DNA (1080bp) protein (360aa)
maleylacetate reductase rbh
Maleylacetate reductase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P194_AZOS1 rbh
Maleylacetate reductase {ECO:0000313|EMBL:BAI74423.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_7693_curated_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9520..9864)
DNA (345bp) protein (115aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P193_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:BAI74422.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_7693_curated_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10064..11032
DNA (969bp) protein (323aa)
transcriptional regulator rbh
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P192_AZOS1 rbh
Transcriptional regulator {ECO:0000313|EMBL:BAI74421.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_7693_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11043..11426
DNA (384bp) protein (128aa)
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03709.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Burkholderia sp. H160 RepID=B5WR54_9BURK
Glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_7693_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11435..12409)
DNA (975bp) protein (325aa)
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03718.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
membrane protein id=2483815 bin=GWF1_Rhodobacteraceae_65_7 species=Oceanicola sp. S124 genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
membrane protein
SCNpilot_expt_1000_bf_scaffold_7693_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12449..13237)
DNA (789bp) protein (263aa)
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03708.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6N9_SPHWW rbh
Displaying 17 items

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