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SCNpilot_expt_1000_bf_scaffold_7693_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(12449..13237)

Top 3 Functional Annotations

Value Algorithm Source
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03708.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.2
  • Coverage: 262.0
  • Bit_score: 448
  • Evalue 8.50e-123
FAD dependent oxidoreductase similarity KEGG
DB: KEGG
  • Identity: 78.5
  • Coverage: 260.0
  • Bit_score: 423
  • Evalue 5.00e-116
  • rbh
FAD dependent oxidoreductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6N9_SPHWW similarity UNIREF
DB: UNIREF100
  • Identity: 78.5
  • Coverage: 260.0
  • Bit_score: 423
  • Evalue 1.60e-115
  • rbh

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 789
AATGCCGCGATCCGCAAGGGGGCGGTCATCGTCGAGAATTGTGCTGTCCGCACACTCTCGCTCTCTGCCGGAAGGGTGGATGGCGTCGTGACGGAACAGGGCGCGATCCGGTGCGACCATGTCCTTCTGGCCGGCGGTCTCTGGTCGCGCAAGTTCCTGGGAAACCTCGGTGTCTTTCTGCCGACGCTGCCGCTGATCTCGTCGGTCATCCGCACGGCCCCGATGGATGGGCCGACGGAGATCGCGGTGGGCGGCCCGGATTTCTCCTTCCGCAAGCGCCTTGACGGCGGCTACACGATCACGCAGCGCGGTGCGCTCGGGGCGCCGCTGCTCCTCGATCATCTTCTCATCGGCATGCGCTATCTGCATATGCTGCGCGGCCAGCGCTCCCTGCTGCGCATCAGCCTCGGCCGGGATTTCCTGAAGGATATCGCCATGCCGCGCCGGTGGGGCGCGACGTCGATCTCGCCCTTCGAACGCGTCCGGACCATGGACCCCGCGCCCGATGCCGCAATCAATGCCGAGGCGATGCGCAATCTGACGGCGGCGTGGCCCCTGTTCGCCAATGCGGTGATCGAGGAGGTCTGGGCAGGCATGATGGACATCACGCCGGATTCGCTACCGGTCATAGCTCCCGTGGCGAAAATTCCGGGCTTCACGGTCGCCTCGGGCTTCTCCGGCCATGGCTTCGGGACCTCCCCGGCCGCCGGCCAGCTCGCCGCCGATCTCATCACCGGCAGCGACCCGATCGTGGACCCGAAACCCTACAGGCTCGAACGTTTCGCCTGA
PROTEIN sequence
Length: 263
NAAIRKGAVIVENCAVRTLSLSAGRVDGVVTEQGAIRCDHVLLAGGLWSRKFLGNLGVFLPTLPLISSVIRTAPMDGPTEIAVGGPDFSFRKRLDGGYTITQRGALGAPLLLDHLLIGMRYLHMLRGQRSLLRISLGRDFLKDIAMPRRWGATSISPFERVRTMDPAPDAAINAEAMRNLTAAWPLFANAVIEEVWAGMMDITPDSLPVIAPVAKIPGFTVASGFSGHGFGTSPAAGQLAADLITGSDPIVDPKPYRLERFA*