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SCNpilot_expt_1000_bf_scaffold_2802_curated_14

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(6717..7721)

Top 3 Functional Annotations

Value Algorithm Source
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR80446.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.5
  • Coverage: 334.0
  • Bit_score: 628
  • Evalue 4.50e-177
peptide ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI000379F40F similarity UNIREF
DB: UNIREF100
  • Identity: 89.5
  • Coverage: 334.0
  • Bit_score: 602
  • Evalue 1.90e-169
  • rbh
ABC transporter permease; K12369 dipeptide transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 83.2
  • Coverage: 334.0
  • Bit_score: 575
  • Evalue 1.00e-161
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
ATGTTGCGCTTTATCTTCGGACGGCTCGCCGTCCTGATACCCACGTTCATCGGGGTATCGATCATCGCGTTCTCCTTCATTCGACTTCTGCCGGGCGATCCGGTCATGCTGATGTCGGGCGAACGCGTCATGTCGCCGGAACACCATGCCGAGCTGATGCACCAGCTCGGTCTCGACCGGCCGATGTACATCCAGTATTTCGACTATCTGACCGGCCTGCTCTCGGGCGACTTCGGCTCGTCGATCGTCACCAAGCGGCGGGTGCTGGAGGATTTCGTAAACCTCTCCCCCGCCACGCTGGAGCTCTCGCTCTGCGCCATCATCGTCGCCGTCGCGCTCGGCATTCCGGCCGGCGTGCTCGCGGCGGTCAAGCGCGGCACCTGGCTCGACCAGTCGATCATGGGCGTCGCCCTCGTCGGCTATTCGATGCCGATCTTCTGGTGGGGGCTGCTGCTCATCATCTTCTTCTCCGGCTATCTCGGCTGGACCCCGGTCTCGGGACGCATCTCGCTGATGTACTTCTTCCCGCAGGTCACCGGCTTCATGCTGATAGACAGCCTGATCTCGGGGCAGGCGGGGGCGTTCAAGTCGGCGCTGACCTACCTGATCCTGCCGACCGTGGTGCTGGCGACGATCCCGCTTGCGGTCATCGCGCGCCAGACCCGCTCGGCCATGCTCGAAGTGCTCGGCGACGACTATGTCCGCACCGCCCGCGCCAAGGGCCTTTCGCCCTTCCGCGTCATCGGCGTCCACGCGCTGCGCAATGCCATGATCCCCGTCATCACCACGATCGGCCTGCAGGTCGGCGTGCTGCTGGCGGGCGCCATCCTGACCGAGACGATCTTCTCCTGGCCGGGCATCGGCAAGTGGATGGTCGACAGCGTCTTCAAGCGCGACTATGCCGTGGTGCAGGGCGGGCTGATGCTGATCGCCGCCGTCATCATGATCGTCAACCTCGTGGTCGACCTGCTTTACGGCTGGGTCAATCCGCGCATCCGGCACTAG
PROTEIN sequence
Length: 335
MLRFIFGRLAVLIPTFIGVSIIAFSFIRLLPGDPVMLMSGERVMSPEHHAELMHQLGLDRPMYIQYFDYLTGLLSGDFGSSIVTKRRVLEDFVNLSPATLELSLCAIIVAVALGIPAGVLAAVKRGTWLDQSIMGVALVGYSMPIFWWGLLLIIFFSGYLGWTPVSGRISLMYFFPQVTGFMLIDSLISGQAGAFKSALTYLILPTVVLATIPLAVIARQTRSAMLEVLGDDYVRTARAKGLSPFRVIGVHALRNAMIPVITTIGLQVGVLLAGAILTETIFSWPGIGKWMVDSVFKRDYAVVQGGLMLIAAVIMIVNLVVDLLYGWVNPRIRH*