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SCNpilot_expt_1000_bf_scaffold_2802_curated_13

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5797..6705)

Top 3 Functional Annotations

Value Algorithm Source
Dipeptide transport system permease protein DppC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQN0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.7
  • Coverage: 302.0
  • Bit_score: 560
  • Evalue 1.30e-156
  • rbh
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR80447.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.7
  • Coverage: 302.0
  • Bit_score: 560
  • Evalue 1.80e-156
dppC-1; dipeptide ABC transporter permease protein DppC 1 similarity KEGG
DB: KEGG
  • Identity: 82.2
  • Coverage: 298.0
  • Bit_score: 475
  • Evalue 9.80e-132
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 909
ATGAGCTCAGTACAGACAACGTCGGAGGCCAAGACGGGCGGCGCGCCGCCGTCGGGCCTTTCCGAATTCTGGTTCTATTTCTCGCGCAACAAGGGCGCCGTGATCGGCCTTGCCGTCTTCCTGGTGATCCTGTTCGTCGCCATCTTCGCGCCCTTCGTCGCGCCGCATAATCCGAGCGTCCAGAACCGCGAGGTCCTGCTCCTGCCGCCGGTCTTCCAGCAGGGCGGCACCTGGGGGCACATCCTCGGCACCGACCCGGTCGGCCGCGACATCCTCTCGCGCCTGATCTACGGCGCGCGTTTCTCGCTCTTCATCGGCCTCGTCGTCGTGACGCTGTCGGTGCTCTCGGGCGTGCTGATCGGTCTCGTCGCCGGCTATTTCCGTGGGCGTGTCGATACCTTCATCATGCGCATCATGGATATCATCCTGGCCTTCCCCTCGCTGCTGCTCGCCCTCGTGCTGGTGGCGGTCCTCGGGCCGGGCCTGCTCAACGCCATGATCGCCATCTCGCTCGTCAACCAGCCGCATTTCGTGCGCCTGACGCGCGCGGCGGTCATGACGGAAAAGTCGAAGGACTATGTCGTCGGCTCGCAGGTTGCCGGTGCCGGCACGTTGCGCCTGATGTTCCTGACGATCCTGCCGAACTGCCTCGCGCCGCTCATCGTGCAGGCGACGCTCGCCTTCTCGGCGGCGATCCTCGACGCGGCGGCCCTCGGCTTCCTCGGCATGGGCGCCCAGCCGCCGACGCCGGAATGGGGCACGATGCTCGCCGAAGCGCGCGAATTCATCCAGCGCGCCTGGTGGGTCGTCACCTTCCCCGGCCTTGCCATCCTCGTCACCGTGCTCGCCATCAATCTCATGGGTGACGGCCTGCGCGACGCCCTCGATCCCAAGCTGAAGAGGTCGTGA
PROTEIN sequence
Length: 303
MSSVQTTSEAKTGGAPPSGLSEFWFYFSRNKGAVIGLAVFLVILFVAIFAPFVAPHNPSVQNREVLLLPPVFQQGGTWGHILGTDPVGRDILSRLIYGARFSLFIGLVVVTLSVLSGVLIGLVAGYFRGRVDTFIMRIMDIILAFPSLLLALVLVAVLGPGLLNAMIAISLVNQPHFVRLTRAAVMTEKSKDYVVGSQVAGAGTLRLMFLTILPNCLAPLIVQATLAFSAAILDAAALGFLGMGAQPPTPEWGTMLAEAREFIQRAWWVVTFPGLAILVTVLAINLMGDGLRDALDPKLKRS*