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SCNpilot_expt_1000_bf_scaffold_2802_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2802_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(303..467)
DNA (165bp) protein (55aa)
UPF0391 membrane protein SHLA_486c00060 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0Q1_9RHIZ
UPF0391 membrane protein SHLA_99c000190 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2802_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(638..835)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW45_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82986.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2802_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(909..1247)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETH1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82985.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2802_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1408..1563
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003684A1A
Uncharacterized protein {ECO:0000313|EMBL:AHF86112.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2802_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1593..1856
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRN2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82983.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2802_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1934..2125)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0P7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82982.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2802_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2275..3075
DNA (801bp) protein (267aa)
Phyllosphere-induced regulator PhyR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTA8_9RHIZ rbh
Phyllosphere-induced regulator PhyR {ECO:0000313|EMBL:EYR82981.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two-component response regulator rbh
SCNpilot_expt_1000_bf_scaffold_2802_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3128..3472)
DNA (345bp) protein (115aa)
RutC family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVD0_9RHIZ
RutC family protein {ECO:0000313|EMBL:EYR80451.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_2802_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3593..3964)
DNA (372bp) protein (124aa)
Thermoresistant gluconokinase GntK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL56_9RHIZ
Thermoresistant gluconokinase GntK {ECO:0000313|EMBL:EYR80450.1}; EC=2.7.1.12 {ECO:0000313|EMBL:EYR80450.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gntK; gluconokinase; K00851 gluconokinase [EC:2.7.1.12]
SCNpilot_expt_1000_bf_scaffold_2802_curated_10
unknown

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comp(4037..4159)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2802_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4116..4946)
DNA (831bp) protein (277aa)
Dipeptide transport ATP-binding protein DppF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G9_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component DppF {ECO:0000313|EMBL:EYR80449.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppf1; oligopeptide ABC transporter; K12372 dipeptide transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2802_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4943..5797)
DNA (855bp) protein (285aa)
Dipeptide transport ATP-binding protein DppD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN30_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component DppD {ECO:0000313|EMBL:EYR80448.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppD; dipeptide ABC transporter ATP-binding protein DppD; K12371 dipeptide transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2802_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5797..6705)
DNA (909bp) protein (303aa)
Dipeptide transport system permease protein DppC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQN0_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR80447.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppC-1; dipeptide ABC transporter permease protein DppC 1 rbh
SCNpilot_expt_1000_bf_scaffold_2802_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6717..7721)
DNA (1005bp) protein (335aa)
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR80446.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptide ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI000379F40F rbh
ABC transporter permease; K12369 dipeptide transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2802_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7823..8866)
DNA (1044bp) protein (348aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00036F9709 rbh
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:EYR80445.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppA; dipeptide binding component of ABC transporter; K12368 dipeptide transport system substrate-binding protein rbh
Displaying 15 items

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