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SCNpilot_expt_1000_bf_scaffold_2833_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(9655..10476)

Top 3 Functional Annotations

Value Algorithm Source
D-xylose-binding periplasmic protein XylF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.0
  • Coverage: 273.0
  • Bit_score: 510
  • Evalue 1.40e-141
  • rbh
ABC-type xylose transport system periplasmic component {ECO:0000313|EMBL:EYR78688.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.0
  • Coverage: 273.0
  • Bit_score: 510
  • Evalue 1.90e-141
Periplasmic binding protein/LacI transcriptional regulator precursor; K02058 simple sugar transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 272.0
  • Bit_score: 456
  • Evalue 7.30e-126
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 822
CAGCAGTTCAACTCGGTCATCGCCCAGGGCGCCAAGGTCATCGTGCTCGACCCGGTCGATTCCGCCGCGGCCGCTGCCCTCGTCGAGATCGCCCAGTCGCAGGACGTCAAGGTCATCGCCTATGACCGCCCGATCCCGGACAAGCCGGCCGACTACTACGTCTCCTTCGACAACCAGGGCATCGGCAAGGCCATCGCCCAGTCGCTCGTCGACCACCTGAAGGCCAAGGGCGTTCCCGATGGCGCCGGCGTGCTGGAGATCAACGGCTCGCCGACCGACGCGGCCGCAGGCCTCATCCGCGACGGCATCCACGAGGCGCTCGAAGCCTCGCCGTACAAGACGCTCGCCGAATTCGACACGCCGGACTGGGCGCCGCCGAAGGCACAGGAATGGGCGGCCGGCCAGATCACCCGCTTCGGCGACGAGATCAAGGGCATCGTGGCGGCCAACGACGGCACGGGCGGCGGCGCCATTGCCGCGCTGAAGGCGGCCGGCGTCAAGGAAATGCCGCCGGTCACCGGCAACGACGCGACCATCGCCGCGCTCCAGCTCATCATCTCGGGCGACCAGTACAACACGATCTCCAAGCCTTCGGACATCGTCGCCGCCGCTGCCGCCAACGTCGCGGTGAAGCTCCTCAAGGGCGAGACGCCGGAAGCCACCCACACGCTCTACGAAACGCCTTCGCAGCTTTTCGTCCCGGCGGTGGTGACGGCCGAGAACATCAAGGCGGAGATCTTCGACAAGGGCATCAACAAGCCCGAGGAAGTCTGCACCGGCGAATATGCCGAGGGCTGCCGCAAACTCGGCATCATGCAGTAA
PROTEIN sequence
Length: 274
QQFNSVIAQGAKVIVLDPVDSAAAAALVEIAQSQDVKVIAYDRPIPDKPADYYVSFDNQGIGKAIAQSLVDHLKAKGVPDGAGVLEINGSPTDAAAGLIRDGIHEALEASPYKTLAEFDTPDWAPPKAQEWAAGQITRFGDEIKGIVAANDGTGGGAIAALKAAGVKEMPPVTGNDATIAALQLIISGDQYNTISKPSDIVAAAAANVAVKLLKGETPEATHTLYETPSQLFVPAVVTAENIKAEIFDKGINKPEEVCTGEYAEGCRKLGIMQ*