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SCNpilot_expt_1000_bf_scaffold_2833_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2833_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..132)
DNA (132bp) protein (44aa)
AsnC family transcriptional regulator {ECO:0000313|EMBL:EYR78645.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI0003748324
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2833_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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258..3308
DNA (3051bp) protein (1017aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:EYR78644.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
class III aminotransferase rbh
Alanine--glyoxylate transaminase n=6 Tax=Rhizobium meliloti RepID=F6BSK0_SINMB rbh
SCNpilot_expt_1000_bf_scaffold_2833_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3461..4945
DNA (1485bp) protein (495aa)
MFS transporter {ECO:0000313|EMBL:KDP73369.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
UPI0003CF594C related cluster n=1 Tax=unknown RepID=UPI0003CF594C rbh
major facilitator superfamily protein rbh
SCNpilot_expt_1000_bf_scaffold_2833_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5062..6693)
DNA (1632bp) protein (544aa)
ribulokinase n=1 Tax=Rhizobium giardinii RepID=UPI00036EDF81 rbh
Ribulokinase 2 {ECO:0000313|EMBL:EYR78692.1}; EC=2.7.1.16 {ECO:0000313|EMBL:EYR78692.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FGGY family carbohydrate kinase protein rbh
SCNpilot_expt_1000_bf_scaffold_2833_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6760..7488)
DNA (729bp) protein (243aa)
Ribitol 2-dehydrogenase RbtD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYD2_9RHIZ rbh
Ribitol 2-dehydrogenase RbtD {ECO:0000313|EMBL:EYR78691.1}; EC=1.1.1.56 {ECO:0000313|EMBL:EYR78691.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ribitol 2-dehydrogenase (EC:1.1.1.56); K00039 ribitol 2-dehydrogenase [EC:1.1.1.56] rbh
SCNpilot_expt_1000_bf_scaffold_2833_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7513..8766)
DNA (1254bp) protein (418aa)
ABC-type xylose transport system, permease component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D237_9RHIZ rbh
ABC-type xylose transport system, permease component {ECO:0000313|EMBL:EYR78690.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylH; xylose ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2833_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8763..9584)
DNA (822bp) protein (274aa)
Putative ribose/galactose/methyl galactoside import ATP-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6L8_9RHIZ rbh
Putative ribose/galactose/methyl galactoside import ATP-binding protein {ECO:0000313|EMBL:EYR78689.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR78689.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type sugar transport systems, ATPase component (EC:3.6.3.17) rbh
SCNpilot_expt_1000_bf_scaffold_2833_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9655..10476)
DNA (822bp) protein (274aa)
D-xylose-binding periplasmic protein XylF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS9_9RHIZ rbh
ABC-type xylose transport system periplasmic component {ECO:0000313|EMBL:EYR78688.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Periplasmic binding protein/LacI transcriptional regulator precursor; K02058 simple sugar transport system substrate-binding protein rbh
Displaying 8 items

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