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SCNpilot_expt_1000_bf_scaffold_12180_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3714..4439)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter, substrate binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D531_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.9
  • Coverage: 246.0
  • Bit_score: 403
  • Evalue 1.20e-109
  • rbh
ABC transporter, substrate binding protein {ECO:0000313|EMBL:EYR83803.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.9
  • Coverage: 246.0
  • Bit_score: 403
  • Evalue 1.70e-109
Putative ABC transporter (substrate-binding protein) similarity KEGG
DB: KEGG
  • Identity: 66.3
  • Coverage: 258.0
  • Bit_score: 330
  • Evalue 5.30e-88
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 726
ATGTTCAGGACATTCCGTATTGCAACCTATGCCAGCCTTCTCACGCTGGGCGGCCTTGCCCCGGCCGCCTCGGCGGCCGATCTCGACGTCGTCGCCAGCTTCTCGATCATCGCCGACTTCGCGAAAAATGTCGGCGGCGAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGATGCCGCCGCGCTCGAAAAGGCGAATGTCGTCCTCGTCAACGGCCTTGAATTCGAGGGCTTCATGAAGCGGCTGATCGAGACCAGCGGCACGAAAGCGCCGGTGGTCGAGGTCACAAAGGGCATCGAGCCGATAAAGGCGGAAGAAGAAGAGCATCACCATGACGGCAAGTCCGAGGAGGCGGGCCATGGACACGACGGCGACGACAAGGAGGAAGCCGGCCACGACCATGCGCATGAGGGCCACCATCATCACGGCGAGTTCGATCCGCATGCCTGGCAGTCGATCCCCAATGCCGAGATCTACGTGAAGAACATCGCCGATGCCTTCTGCGAGGCCGACAAGGCCGGTTGCGCCACCTACACCGCCAATGCGGATGCCTATCTTGCCAAGCTCGCCGCGCTTGAAACGGAGGTGAAAGCGGCGATCGATGCGATCCCCGCCGACAAGCGCACCATCATCACCTCGCATGATGCCTTCGGCTATTTCGAGCACGAATACGGCCTGAAGTTCATCGCGCCGGAGGGCGTCTAG
PROTEIN sequence
Length: 242
MFRTFRIATYASLLTLGGLAPAASAADLDVVASFSIIADFAKNVGGERXXXXXXXXXXXXXXXADAAALEKANVVLVNGLEFEGFMKRLIETSGTKAPVVEVTKGIEPIKAEEEEHHHDGKSEEAGHGHDGDDKEEAGHDHAHEGHHHHGEFDPHAWQSIPNAEIYVKNIADAFCEADKAGCATYTANADAYLAKLAALETEVKAAIDAIPADKRTIITSHDAFGYFEHEYGLKFIAPEGV*