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SCNpilot_expt_1000_bf_scaffold_4728_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 898..2451

Top 3 Functional Annotations

Value Algorithm Source
Ribose import ATP-binding protein RbsA 1 {ECO:0000313|EMBL:EYR82517.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR82517.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 517.0
  • Bit_score: 918
  • Evalue 4.40e-264
ABC transporter n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KE69_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 78.8
  • Coverage: 509.0
  • Bit_score: 787
  • Evalue 8.30e-225
  • rbh
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] similarity KEGG
DB: KEGG
  • Identity: 78.7
  • Coverage: 508.0
  • Bit_score: 786
  • Evalue 4.40e-225
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1554
GTGGCGGCACAAGCACATACCGCGCAGCAACCGGCGGCGCTCCTTGAACTCAGGAACATCCAGAAATGGTTCGGCGGCGTCCATGCCCTGCGCGGCATCGACCTGACGCTCCAGCCGGGCGAGGCCTACCATCTCCTGGGCGAGAACGGTTGCGGCAAGAGCACTGTCATCAAGATCATGTCGGGCGCGCATGCACCGACCTCGGGCGAGATTGTGCTGGGCGGAGAGACTTTCTCGTCGCTGACGCCGATCCAGTCGCTCGCCGCCGGCATCGAGACCGTCTACCAGGACCTGTCGCTGCTGCCGAACCTTACGGTCGCCGAGAACGTCGCGCTGAACGAGCAACTCGTCAACGCCAACGGCCGCCTCGCCCGCCTCTTCGACCGCAAGCGACTGAAGGAGACGGCGGAACGGGCGCTCGCCGCCGCGGGCCTGCCGATCGACCGCGCCTTCCTCAACACCATCGTTTCCGACCTGCCGCTCGCCTCGCGCCAGCTCGTCGCCATAGCGCGGGCCATCGCGACCCGCGCCAAGCTCGTCATCATGGACGAGCCGACGACGTCGCTGACGCGCCGCGAGGTCGACAATCTCATCCGCGTCGTCGAGCGCCTGCGCTCCGAAAACGTCGCCGTGCTCTTCGTCACGCACAAGCTGGACGAATGCTACCGCATCGGCGGCCATGCCGTCGTCTTCCGCGATGGCCAGTGCGTGGCGCAAGGCCCCATCGCGAACTACAGCAAGAAGGAGCTGGCCGAGCTGATGACCGGCCGCTCCATCGATGCCCAGCGCTATCGCACCGGCAAGCCCTCCGATGAAGAACTCCTCAAGGTCGACCGTCTCGCCGCCGATGGCGTGCAGGAGATGAGCTTCTCGCTGAGGAAGGGCGAAATCCTCGGCATCACCGGCCTTGCCGATTCCGGCCGCAACGAACTCGCCATGGCCCTGACGGGCGTCGCCCCCGCATCGGCCGGAACGCTCACGCTCGACGGCAAGGCCGTCACCGTGCGCTCGCCGGCAGAGGCCATCGAGCAGGGCATCGGCTACGTGCCGGAGGACCGGCTGGCCGAAGGCCTCTTCCTCGACAAGTCGATCTTCGAGAACGAGATCGCGCTCATCGTCTCGCGCCTTGCCAATTCGCTCGGCGTCGTCGACCGGGAGGAGGGGCGCAGGATCGCCGCGCGCCTTTCCGAGGAGATGCGGCTCAACACGAAGAACCTCGACCTGCCGGTCGGCGCGCTCTCGGGCGGCAACCAGCAGCGCGTGCTGATCGGCCGCTGGCTCAGCATCGCGCCGAAGCTGCTCGTGCTGCACGGGCCGACCGTCGGCGTCGACGTCGGCTCCAAGGATACGATCTATCGCGTCATCCAGGCGCTCGCCGAGGCGGGCATGGGCCTCGTCATCGTCAGCGACGACCTGCCCGAGCTTCTGCAGAACGCCGACCGCATCCTCGTCATGAACAGCGGCCGGGTGGTCGCGGAGGTGGATGCGGAGCAGGCGAGCGAGGACCAGCTTTACAAGGCGATGCTGACGACCATGACGGAGACTGTGCAATGA
PROTEIN sequence
Length: 518
VAAQAHTAQQPAALLELRNIQKWFGGVHALRGIDLTLQPGEAYHLLGENGCGKSTVIKIMSGAHAPTSGEIVLGGETFSSLTPIQSLAAGIETVYQDLSLLPNLTVAENVALNEQLVNANGRLARLFDRKRLKETAERALAAAGLPIDRAFLNTIVSDLPLASRQLVAIARAIATRAKLVIMDEPTTSLTRREVDNLIRVVERLRSENVAVLFVTHKLDECYRIGGHAVVFRDGQCVAQGPIANYSKKELAELMTGRSIDAQRYRTGKPSDEELLKVDRLAADGVQEMSFSLRKGEILGITGLADSGRNELAMALTGVAPASAGTLTLDGKAVTVRSPAEAIEQGIGYVPEDRLAEGLFLDKSIFENEIALIVSRLANSLGVVDREEGRRIAARLSEEMRLNTKNLDLPVGALSGGNQQRVLIGRWLSIAPKLLVLHGPTVGVDVGSKDTIYRVIQALAEAGMGLVIVSDDLPELLQNADRILVMNSGRVVAEVDAEQASEDQLYKAMLTTMTETVQ*