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SCNpilot_expt_1000_bf_scaffold_4728_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4728_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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625..807
DNA (183bp) protein (61aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYX4_9RHIZ
Monosaccharide ABC transporter substrate-binding protein, CUT2 family {ECO:0000313|EMBL:EYR82518.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic binding protein/LacI transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4728_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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898..2451
DNA (1554bp) protein (518aa)
Ribose import ATP-binding protein RbsA 1 {ECO:0000313|EMBL:EYR82517.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR82517.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KE69_9RHIZ rbh
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
SCNpilot_expt_1000_bf_scaffold_4728_curated_3
unknown

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comp(2849..3019)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4728_curated_4
unknown

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comp(3182..3436)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YCA7_SORCE
SCNpilot_expt_1000_bf_scaffold_4728_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3514..4515
DNA (1002bp) protein (334aa)
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C625_9RHIZ rbh
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK {ECO:0000313|EMBL:EYR82515.1}; EC=2.7.-.- {ECO:0000313|EMBL:EYR82515.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Glycerone kinase; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_4728_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4520..5167
DNA (648bp) protein (216aa)
Phosphatase Dak n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLV5_9RHIZ rbh
Phosphatase Dak {ECO:0000313|EMBL:EYR82514.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Dak phosphatase rbh
SCNpilot_expt_1000_bf_scaffold_4728_curated_7
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5505..6044)
DNA (540bp) protein (180aa)
molybdenum cofactor synthesis domain-containing protein n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F493
Tax=CG_Rhodob_01
molybdenum cofactor synthesis domain-containing protein; K03831 molybdopterin adenylyltransferase [EC:2.7.7.75]
SCNpilot_expt_1000_bf_scaffold_4728_curated_8
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6034..6546)
DNA (513bp) protein (171aa)
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
3-dehydroquinate dehydratase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EG18_9RHOB
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4728_curated_9
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6546..7034)
DNA (489bp) protein (163aa)
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
moaC1; molybdenum cofactor biosynthesis protein C; K03637 molybdenum cofactor biosynthesis protein C
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2IRI5_9RHOB
SCNpilot_expt_1000_bf_scaffold_4728_curated_10
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7031..7816)
DNA (786bp) protein (262aa)
Tax=BJP_IG2158_Rhodobacterales_64_37
UPI0003D1BC9A related cluster n=1 Tax=unknown RepID=UPI0003D1BC9A rbh
moeB1; molybdenum cofactor biosynthesis protein B
SCNpilot_expt_1000_bf_scaffold_4728_curated_11

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comp(7822..8076)
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN67296.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
moaD1; molybdenum cofactor biosynthesis protein D; K03636 molybdopterin synthase sulfur carrier subunit
Molybdenum cofactor biosynthesis protein D-1 n=8 Tax=Rhodobacter capsulatus RepID=D5AP66_RHOCB
SCNpilot_expt_1000_bf_scaffold_4728_curated_12
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8082..9134)
DNA (1053bp) protein (351aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein rbh
Cyclic pyranopterin monophosphate synthase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PKW6_RHOS1 rbh
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_expt_1000_bf_scaffold_4728_curated_13
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9124..9855)
DNA (732bp) protein (244aa)
Molybdopterin biosynthesis protein MoeA n=1 Tax=Rhodobacter capsulatus YW1 RepID=V8H651_RHOCA
moeA; molybdopterin biosynthesis protein MoeA; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdopterin biosynthesis protein MoeA {ECO:0000313|EMBL:ADE84387.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
Displaying 13 items

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