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SCNpilot_expt_1000_bf_scaffold_8754_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 3340..4884

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.1
  • Coverage: 532.0
  • Bit_score: 659
  • Evalue 2.80e-186
ribonuclease n=1 Tax=Rhizobium giardinii RepID=UPI0003702EB7 similarity UNIREF
DB: UNIREF100
  • Identity: 66.7
  • Coverage: 540.0
  • Bit_score: 647
  • Evalue 1.30e-182
  • rbh
rne; ribonuclease E (EC:3.1.26.12) similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 529.0
  • Bit_score: 640
  • Evalue 3.90e-181
  • rbh

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Taxonomy

Ensifer adhaerens → Ensifer → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1545
GTGCATCCGATCTTCTCGCGCTCGGGCATCGAGGCCCAGCTCGACCGCATGCTGCAGCCGCAGGTGACGCTGAAGTCCGGCGGCTACATCATCATCAACCAGACAGAGGCGCTCGTCTCGATCGACGTCAACTCCGGCCGCTCGACGCGCGAGCACTCCATCGAGGAGACCGCGCTCCAGACGAACCTGGAAGCGGCCGAGGAAGTGGCGCGCCAGCTTCGCCTGCGCGACCTTGCCGGCCTCGTCGTCATCGACTTCATCGACATGGAGGAGAAGCGCAACAACCGGGCCGTCGAGAAGCGCCTGAAGGATCATCTCAAGAACGACCGCGCACGCATCCAGGTCGGCCGCATCTCGCATTTCGGCCTGCTGGAAATGTCGCGCCAGCGCATCCGCGCCTCGGTTCTCGAATCGACGATGCAGACCTGCCCGCACTGCAACGGCACGGGCCATATCCGCTCGCAGTCGTCGGTCGCGCTGCATGTCCTGCGCGGCATCGAGGAATATCTCCTCAAGAACACGACGCACAACATCACCGTCCGCGCGACGCCCGACATCGCGCTCTACCTGCTCAACCACAAGCGCGGCACGATCATCGATTACGAAGCCCGCTTCGGCGTCGCCATCATCATCGAGGCGGATGCCCATGTCGGCGCGCAGCACTTCGCGATCGACCGCGGCGAGCCTGTCGAGACCCCGGTCAAGATCGACCAGATCCTGCATTTCGAGCCGGAACCGGAAGAAGATGACGATGTGGTGATCGAGGACGAGATCGACGAGGAAGAGGACGATGCCCGTCCGGCCACGGCCGCGCAGGGCTCCGCGTCGACCTCCTCGGACGAGAACGGCCGCAACAAGCGCAAGCGCCGTCGTCGCCGTCGTGGCCGTGGCCGCGAGAATGGCGAAGGCACCGATACCGCATACTTCGGCGGCGAACAGGCCGGCGACGAGGATGTGCTCGACGACGACGAGGTGGACGGCGAAGAGGGCGCGGAAGCCTCTCAGGCACAGGCCGACGAGACGCCCGAGCAGCGCCGCAAGCGCCGTCGCCGCGGCAAGCGTGGTGGCCGCCGCAACCGTCCCGAGGACGGCTCGCTCGAAGCCGGCGCCGAAGCGGACGATGCCGATGGCGAGAGTGACGCCGAAGGCGGCGATGCCGACGAGGTGGAGGTCGCCGAAACGGACGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCCGAAGCGCGCGCGCCGCAGCCGGGCCAAGGCCGTCGAAGAAACCACCGCCGACGAGGCCGCCCGCAGCGAGATCGAGGCACAGCCGGCCCCGGTCGTCGCCGCGGCGGAGGCAGCGCCTGCCGAACCGGAGGTCGCCGAGGCGTCCGCCGATCTCGAAGAGCCGGCCAAGCCCGCCCGGGCCAATCGCGATATCTCCAGGATCGCCTCGGAGCCGGTGATCAAGTCGTCTTCGACGAAGGAGGCGGCCACGGACGAGGACGCCGAAAAGCCCAAGAAGGGCGGCTGGTGGCAGCGCCGCGGCTTCTTCTGA
PROTEIN sequence
Length: 515
VHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEETALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKRLKDHLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEYLLKNTTHNITVRATPDIALYLLNHKRGTIIDYEARFGVAIIIEADAHVGAQHFAIDRGEPVETPVKIDQILHFEPEPEEDDDVVIEDEIDEEEDDARPATAAQGSASTSSDENGRNKRKRRRRRRGRGRENGEGTDTAYFGGEQAGDEDVLDDDEVDGEEGAEASQAQADETPEQRRKRRRRGKRGGRRNRPEDGSLEAGAEADDADGESDAEGGDADEVEVAETDVXXXXXXXXXXXXXXKPKRARRSRAKAVEETTADEAARSEIEAQPAPVVAAAEAAPAEPEVAEASADLEEPAKPARANRDISRIASEPVIKSSSTKEAATDEDAEKPKKGGWWQRRGFF*