name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_8754_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(220..387)
|
N-acetylmuramoyl-L-alanine amidase AmiB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXI6_9RHIZ
N-acetylmuramoyl-L-alanine amidase AmiB {ECO:0000313|EMBL:EYR82292.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EYR82292.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amiC; n-acetylmuramoyl-l-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
646..1431
|
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UWD5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN85995.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_3
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2933..3166)
|
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3340..4884
|
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ribonuclease n=1 Tax=Rhizobium giardinii RepID=UPI0003702EB7
rbh
rne; ribonuclease E (EC:3.1.26.12)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5017..5781
|
Glucose 1-dehydrogenase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU19_9RHIZ
rbh
Glucose 1-dehydrogenase 2 {ECO:0000313|EMBL:EYR80774.1}; EC=1.1.1.47 {ECO:0000313|EMBL:EYR80774.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short chain dehydrogenase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5857..6567)
|
Putative aspartate aminotransferase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D306_9RHIZ
rbh
Putative aspartate aminotransferase 2 {ECO:0000313|EMBL:EYR80773.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EYR80773.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspB2; aspartate transaminase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_7
unknown
|
Not on your lists |
6957..7193
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7219..7977
|
Putative outer membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC8_9RHIZ
rbh
Putative outer membrane protein {ECO:0000313|EMBL:EYR80772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Protein-disulfide isomerase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8126..8563
|
3-dehydroquinate dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVJ7_9RHIZ
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aroQ2; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8586..9047
|
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE26_9RHIZ
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EYR80770.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9058..10404
|
Biotin carboxylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU14_9RHIZ
rbh
Biotin carboxylase {ECO:0000313|EMBL:EYR80769.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EYR80769.1};; EC=6.4.1.2 {ECO:0000313|EMBL:EYR80769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyl-CoA carboxylase biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_12
unknown
|
Not on your lists |
comp(10797..10994)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11246..11506)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80767.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11788..12186)
|
Ubiquinone oxidoreductase 172 kD subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVJ3_9RHIZ
Ubiquinone oxidoreductase 172 kD subunit {ECO:0000313|EMBL:EYR80766.1}; EC=1.6.99.3 {ECO:0000313|EMBL:EYR80766.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADH dehydrogenase (EC:1.6.99.3)
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12340..12840)
|
Acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE21_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EYR80765.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12845..14347)
|
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU09_9RHIZ
rbh
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gatB; glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14477..14782
|
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D300_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EYR80763.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_8754_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14840..15283
|
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC1_9RHIZ
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:EYR80762.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator
|