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SCNpilot_expt_1000_bf_scaffold_8754_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8754_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(220..387)
DNA (168bp) protein (56aa)
N-acetylmuramoyl-L-alanine amidase AmiB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXI6_9RHIZ
N-acetylmuramoyl-L-alanine amidase AmiB {ECO:0000313|EMBL:EYR82292.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EYR82292.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amiC; n-acetylmuramoyl-l-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
SCNpilot_expt_1000_bf_scaffold_8754_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

646..1431
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UWD5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN85995.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_8754_curated_3
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2933..3166)
DNA (234bp) protein (78aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_8754_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3340..4884
DNA (1545bp) protein (515aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ribonuclease n=1 Tax=Rhizobium giardinii RepID=UPI0003702EB7 rbh
rne; ribonuclease E (EC:3.1.26.12) rbh
SCNpilot_expt_1000_bf_scaffold_8754_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5017..5781
DNA (765bp) protein (255aa)
Glucose 1-dehydrogenase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU19_9RHIZ rbh
Glucose 1-dehydrogenase 2 {ECO:0000313|EMBL:EYR80774.1}; EC=1.1.1.47 {ECO:0000313|EMBL:EYR80774.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short chain dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_8754_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..6567)
DNA (711bp) protein (237aa)
Putative aspartate aminotransferase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D306_9RHIZ rbh
Putative aspartate aminotransferase 2 {ECO:0000313|EMBL:EYR80773.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EYR80773.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspB2; aspartate transaminase rbh
SCNpilot_expt_1000_bf_scaffold_8754_curated_7
unknown

Not on your lists

6957..7193
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8754_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7219..7977
DNA (759bp) protein (253aa)
Putative outer membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC8_9RHIZ rbh
Putative outer membrane protein {ECO:0000313|EMBL:EYR80772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Protein-disulfide isomerase rbh
SCNpilot_expt_1000_bf_scaffold_8754_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8126..8563
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVJ7_9RHIZ
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aroQ2; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
SCNpilot_expt_1000_bf_scaffold_8754_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8586..9047
DNA (462bp) protein (154aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE26_9RHIZ
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EYR80770.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_1000_bf_scaffold_8754_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9058..10404
DNA (1347bp) protein (449aa)
Biotin carboxylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU14_9RHIZ rbh
Biotin carboxylase {ECO:0000313|EMBL:EYR80769.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EYR80769.1};; EC=6.4.1.2 {ECO:0000313|EMBL:EYR80769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyl-CoA carboxylase biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] rbh
SCNpilot_expt_1000_bf_scaffold_8754_curated_12
unknown

Not on your lists

comp(10797..10994)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8754_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11246..11506)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80767.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8754_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11788..12186)
DNA (399bp) protein (133aa)
Ubiquinone oxidoreductase 172 kD subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVJ3_9RHIZ
Ubiquinone oxidoreductase 172 kD subunit {ECO:0000313|EMBL:EYR80766.1}; EC=1.6.99.3 {ECO:0000313|EMBL:EYR80766.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADH dehydrogenase (EC:1.6.99.3)
SCNpilot_expt_1000_bf_scaffold_8754_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12340..12840)
DNA (501bp) protein (167aa)
Acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE21_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EYR80765.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_8754_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12845..14347)
DNA (1503bp) protein (501aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU09_9RHIZ rbh
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gatB; glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] rbh
SCNpilot_expt_1000_bf_scaffold_8754_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14477..14782
DNA (306bp) protein (102aa)
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D300_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EYR80763.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8754_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14840..15283
DNA (444bp) protein (148aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC1_9RHIZ
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:EYR80762.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator
Displaying 18 items

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