ggKbase home page

SCNpilot_expt_1000_bf_scaffold_9512_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 5095..6342

Top 3 Functional Annotations

Value Algorithm Source
Lipid A core-O-antigen ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUU7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.0
  • Coverage: 409.0
  • Bit_score: 723
  • Evalue 1.50e-205
  • rbh
Lipid A core-O-antigen ligase {ECO:0000313|EMBL:EYR81351.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.0
  • Coverage: 409.0
  • Bit_score: 723
  • Evalue 2.20e-205
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 74.3
  • Coverage: 401.0
  • Bit_score: 604
  • Evalue 2.50e-170
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1248
TTGAGCGACGCGGCCCTCCCCCACGCCACGCCCTTCCGGCCGCAGCTCGCGGCTGTCGGCATCGTCGGCTCCATGCTGGTGACGACGGGCGTCTTCCTGTCGGGCTTCGTCATCAGCGAGCCGGCGCCCTACGAGGTGTTCATGGCAGGCCTCATCGGCCTCTGGGCGGTGGTGGGCCTGCGCATCTCGCGCGGCATCGCGCCGCTCCTGGTGCTGCTCGTGCTCTTCAATGTCGGCGGCATGCTCTCGCTGACGGTGATGGACGACCTTTCGAGCGGCCCGATGTACATGGCCGTCTCGCTGTTCCTCGCCCTTTCCAGCGTCTTCTTCGCCGCCATCGTGGAGGCACGCCCGGCGCGGCTGGAGCTCATCTTCCGCGCCTGGGTGGCGGGCGCGCTCATCACCTCGATCCTCGGCATCCTCGGTTATTTCCACGCCTTTCCCGGCGCAGAGGCCTTCACGCTCTACGACCGCGCCAAGGGCGCCTTCCAGGATCCCAACGTCTTCGGCCCCTTCCTCGTCGCGCCGTCGCTCTACCTGATGCACGGCCTGCTTTCCGGCCGCATCCTCGGCGCGCCGCTGAAGGTGGTCGGCGTCCTGATCCTGGCGCTCGGCCTCTTCCTCTCCTTCTCCCGCGCGGCCTGGGGGCTCTACCTCTTCGGCGTGGTGGCGCTGGTCTTCGTCATGCTGCTGAAGGAGCGCACCGGCGCCTTCCGGCTGAAGATCCTCATCCTCAGCCTTTCGGCCGCGGGCCTGATGATCCTCGCGCTGGTCGCCGCGCTGCAATTCGACAAGGTCGCGAACCTCTTCTCCAGCCGAACGCAGCTCGTGCAGGAATATGACGGCGGGCATCTCGGCCGCTTCGAGCGCCACCGCATCGGCTTCCTGATGGCCATGGAAAAGCCGCTCGGCATCGGCCCGATGATGTTCAGCAAGATGTTCCCGGAGGACGAGCACAACATCTACCTGAAATCGCTGACCACTTACGGCTGGCTGGGTTTCGCCACCTACCTGACGCTCATGGCATGGACGCTTTCGGCCGGCTTCAGGGTTCTGCTGCGCGACCGTCCGTGGCAACCCTTCCTGATGATCGCCTTCATCACCCTCCTCGGGCACAGCGCCATCGGCTTCGTCATCGACACCGATCACTGGCGTCACTTCTACCTGCTGCTCGGGGTGGTATGGGGATGCCTTGCGCTGGAACGGCGCCACAACCGGCGGATCGCATCGGGCACCACCCTTGCCTGA
PROTEIN sequence
Length: 416
LSDAALPHATPFRPQLAAVGIVGSMLVTTGVFLSGFVISEPAPYEVFMAGLIGLWAVVGLRISRGIAPLLVLLVLFNVGGMLSLTVMDDLSSGPMYMAVSLFLALSSVFFAAIVEARPARLELIFRAWVAGALITSILGILGYFHAFPGAEAFTLYDRAKGAFQDPNVFGPFLVAPSLYLMHGLLSGRILGAPLKVVGVLILALGLFLSFSRAAWGLYLFGVVALVFVMLLKERTGAFRLKILILSLSAAGLMILALVAALQFDKVANLFSSRTQLVQEYDGGHLGRFERHRIGFLMAMEKPLGIGPMMFSKMFPEDEHNIYLKSLTTYGWLGFATYLTLMAWTLSAGFRVLLRDRPWQPFLMIAFITLLGHSAIGFVIDTDHWRHFYLLLGVVWGCLALERRHNRRIASGTTLA*