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SCNpilot_expt_1000_bf_scaffold_9512_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9512_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1557)
DNA (1557bp) protein (519aa)
Succinoglycan biosynthesis transport protein ExoP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3V1_9RHIZ rbh
Succinoglycan biosynthesis transport protein ExoP {ECO:0000313|EMBL:EYR81347.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane succinoglycan biosynthesis transport protein rbh
SCNpilot_expt_1000_bf_scaffold_9512_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1757..2332
DNA (576bp) protein (192aa)
Putative polysaccharide export protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ50_9RHIZ rbh
Putative polysaccharide export protein {ECO:0000313|EMBL:EYR81348.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polysaccharide export system protein; K01991 polysaccharide export outer membrane protein
SCNpilot_expt_1000_bf_scaffold_9512_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2864..3508
DNA (645bp) protein (215aa)
Glycosyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW79_9RHIZ rbh
Glycosyltransferase {ECO:0000313|EMBL:EYR81349.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_9512_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4103..5098
DNA (996bp) protein (332aa)
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase GumD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEV8_9RHIZ rbh
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase GumD {ECO:0000313|EMBL:EYR81350.1}; EC=2.7.8.31 {ECO:0000313|EMBL:EYR81350.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_9512_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5095..6342
DNA (1248bp) protein (416aa)
Lipid A core-O-antigen ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUU7_9RHIZ rbh
Lipid A core-O-antigen ligase {ECO:0000313|EMBL:EYR81351.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9512_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7197..7727)
DNA (531bp) protein (177aa)
HTH-type transcriptional regulator mlrA MerR-like regulator A {ECO:0000313|EMBL:EYR81443.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MerR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036660A6 rbh
MerR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_9512_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7857..8195)
DNA (339bp) protein (113aa)
Integration host factor subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D065_9RHIZ
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
integration host factor, alpha subunit
SCNpilot_expt_1000_bf_scaffold_9512_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8295..9266)
DNA (972bp) protein (324aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX66_9RHIZ rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoacyl-ACP synthase; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] rbh
SCNpilot_expt_1000_bf_scaffold_9512_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9268..10323)
DNA (1056bp) protein (352aa)
Phosphate acyltransferase PlsX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFW3_9RHIZ rbh
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="
plsX; putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] rbh
SCNpilot_expt_1000_bf_scaffold_9512_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10467..10679)
DNA (213bp) protein (71aa)
Putative metal-binding, possibly nucleic acid-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW7_9RHIZ
Putative metal-binding, possibly nucleic acid-binding protein {ECO:0000313|EMBL:EYR81447.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9512_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10969..11598)
DNA (630bp) protein (210aa)
Ubiquinol-cytochrome c reductase complex chaperone CBP3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4U8_9RHIZ
Ubiquinol-cytochrome c reductase complex chaperone CBP3 {ECO:0000313|EMBL:EYR81448.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ubiquinol-cytochrome C chaperone
SCNpilot_expt_1000_bf_scaffold_9512_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11694..12161
DNA (468bp) protein (156aa)
Putative outer membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D062_9RHIZ
Putative outer membrane protein {ECO:0000313|EMBL:EYR81449.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9512_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12234..13652)
DNA (1419bp) protein (473aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BVB9_RHILV rbh
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] rbh
Displaying 13 items

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