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SCNpilot_expt_1000_bf_scaffold_9512_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(7857..8195)

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D065_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.4
  • Coverage: 112.0
  • Bit_score: 209
  • Evalue 2.00e-51
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.4
  • Coverage: 112.0
  • Bit_score: 209
  • Evalue 2.90e-51
integration host factor, alpha subunit similarity KEGG
DB: KEGG
  • Identity: 94.6
  • Coverage: 112.0
  • Bit_score: 207
  • Evalue 1.90e-51

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 339
ATGAGCGGCAAGACGGTGACACGCGCAGATTTGGCCGAATCGGTTTTCCGGAAGGTCGGGCTTTCCCGAACCGAATCCGCGGAGCTCGTCGAAACCGTGATCGACGAGATCTGCAACGCCATCGTGCGGGGAGAGAGCGTGGAGCTCTCCTCCTTCGCGACCTTCCAGGTGCGGGACAAGAACGAGCGCATCGGCCGCAACCCGAAGACCGGGGAGGAAGTGCCGATCTCGCCGCGCCGCGTGATGACCTTCAAGGCCTCGAACGTGCTCAAGCAGCGGGTGCTGAAGGCGCATCTCGCGCGCAAGGCGAAGCTGAAGCCGGCTTCGCCCGCATCCTGA
PROTEIN sequence
Length: 113
MSGKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVELSSFATFQVRDKNERIGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLARKAKLKPASPAS*