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SCNpilot_expt_1000_bf_scaffold_7280_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 5444..6154

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal large subunit pseudouridine synthase C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES98_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 235.0
  • Bit_score: 468
  • Evalue 5.10e-129
  • rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 235.0
  • Bit_score: 468
  • Evalue 7.10e-129
rluC; ribosomal large subunit pseudouridine synthase C (EC:4.2.1.70); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 236.0
  • Bit_score: 447
  • Evalue 2.20e-123
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGCTGCTGCATGAGGACGACAAGGTCTTCGTGCTCAACAAGCCGGCCGGCATCGCCGTGCAGGGCGGCTCGGGCGTCACGCGGCATATCGACAAGATGCTGGAGGCCTGGACGAGCCAGAAGGGCGAGAAGCCGCGCCTCGTCCACCGCCTCGACCGCGACACGTCCGGCGTCCTCGTCATCGCCCGCACGCGCGGCGCGGCGCAGAAACTGACCGCCGCCTTCCGCGAGCGCGACACCAAGAAGACCTACTGGTCCGTGGTCAAGGGCGTGCCGAAGAAGCGGGAGGACAAGATCTCCACCTGGCTCGTCAAGGAGCAGACGCCGGACGGCGACCGTATGCGGATCGCCAAGCATGGCGAGGACGGCGCGGACCACGCCGTCTCCTTCTACCGCGTCGTCGAGCAGGCCGGGCAGAATTTCGCCTGGCTGGAGATGGAGCCCTATACCGGCCGCACCCACCAGCTTCGCGTCCACGCCGCCCATATCGGCCACCCGATCCTCGGCGACCCCAAATATTTCGACGCGGACGTCAACTGGAACTTCCCGGGCGGCGTGCAGAACCGCCTGCACCTCCATGCCCGCCACATCGACATTCCGCATCCTTCCGGCGGGCGCCTGCGCGTCACCGCGCCGCTGCCGCCGCACATGGTGCAGACCTGGAACCTCTTCGGCTTCGACCAGAGCGCGGCGGACGGGGAAGACGACTGA
PROTEIN sequence
Length: 237
MLLHEDDKVFVLNKPAGIAVQGGSGVTRHIDKMLEAWTSQKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKTYWSVVKGVPKKREDKISTWLVKEQTPDGDRMRIAKHGEDGADHAVSFYRVVEQAGQNFAWLEMEPYTGRTHQLRVHAAHIGHPILGDPKYFDADVNWNFPGGVQNRLHLHARHIDIPHPSGGRLRVTAPLPPHMVQTWNLFGFDQSAADGEDD*