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SCNpilot_expt_1000_bf_scaffold_7280_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7280_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2318)
DNA (2316bp) protein (772aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycine dehydrogenase n=1 Tax=Rhizobium giardinii RepID=UPI0003799D14 rbh
gcvP; putative glycine dehydrogenase decarboxylating protein (EC:1.4.4.2) rbh
SCNpilot_expt_1000_bf_scaffold_7280_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2318..2680)
DNA (363bp) protein (121aa)
Glycine cleavage system H protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGA7_9RHIZ
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gcvH; glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2816..3955)
DNA (1140bp) protein (380aa)
Aminomethyltransferase GcvT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C0Q3_9RHIZ rbh
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gcvT3; aminomethyltransferase GcvT (EC:2.1.2.10) rbh
SCNpilot_expt_1000_bf_scaffold_7280_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4355..4642)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EIN1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79857.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7280_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4892..5128
DNA (237bp) protein (79aa)
Transcriptional regulator {ECO:0000313|EMBL:EYR79858.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TWW0_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5444..6154
DNA (711bp) protein (237aa)
Ribosomal large subunit pseudouridine synthase C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES98_9RHIZ rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rluC; ribosomal large subunit pseudouridine synthase C (EC:4.2.1.70); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] rbh
SCNpilot_expt_1000_bf_scaffold_7280_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6154..6819
DNA (666bp) protein (222aa)
Putative phosphoglycolate phosphatase Gph n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUR4_9RHIZ rbh
Putative phosphoglycolate phosphatase Gph {ECO:0000313|EMBL:EYR79860.1}; EC=3.1.3.18 {ECO:0000313|EMBL:EYR79860.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gph2; phosphoglycolate phosphatase (EC:3.1.3.18) rbh
SCNpilot_expt_1000_bf_scaffold_7280_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6963..7535
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZB2_9RHIZ
Chaperone {ECO:0000313|EMBL:EYR79861.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved hypothetical protein; putative chaperone protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_9
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7627..9168
DNA (1542bp) protein (514aa)
Propionyl-CoA carboxylase beta chain protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VRX7_9RHIZ rbh
Propionyl-CoA carboxylase beta chain protein {ECO:0000313|EMBL:EJZ21667.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
propionyl-CoA carboxylase beta chain rbh
SCNpilot_expt_1000_bf_scaffold_7280_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9190..9576
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAD6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79863.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DoxX family protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9573..9887)
DNA (315bp) protein (105aa)
Quaternary ammonium compound-resistance protein SugE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESA1_9RHIZ
Quaternary ammonium compound-resistance protein SugE {ECO:0000313|EMBL:EYR79864.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cation/cationic drug transporter
SCNpilot_expt_1000_bf_scaffold_7280_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10046..10879)
DNA (834bp) protein (278aa)
S-formylglutathione hydrolase FghA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUR8_9RHIZ rbh
S-formylglutathione hydrolase FghA {ECO:0000313|EMBL:EYR79865.1}; EC=3.1.2.12 {ECO:0000313|EMBL:EYR79865.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
S-formylglutathione hydrolase (EC:3.1.2.12) rbh
SCNpilot_expt_1000_bf_scaffold_7280_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10898..11548)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZB8_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79866.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11545..12024)
DNA (480bp) protein (160aa)
UPF0178 protein QWE_11082 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PFW3_9RHIZ
UPF0178 protein QWE_11082 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12017..12271)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003708720
Plasmid stabilization system {ECO:0000313|EMBL:EKF59764.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
plasmid stabilization system
SCNpilot_expt_1000_bf_scaffold_7280_curated_16
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12323..12577)
DNA (255bp) protein (85aa)
Putative addiction module antidote protein, CC2985 family n=1 Tax=Rhizobium sp. CF080 RepID=J3C191_9RHIZ
Addiction module antidote protein, CC2985 family {ECO:0000313|EMBL:EUB95495.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_7280_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12639..13097)
DNA (459bp) protein (153aa)
Protein ElaA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAE1_9RHIZ
Putative acyltransferase {ECO:0000313|EMBL:EYR79868.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase; K02348 ElaA protein
SCNpilot_expt_1000_bf_scaffold_7280_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13097..13189)
DNA (93bp) protein (31aa)
Alcohol dehydrogenase class-3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYZ5_9RHIZ
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
adhI-2; bifunctional alcohol dehydrogenase class 3/S-(hydroxymethyl)glutathione dehydrogenase 2 (EC:1.1.1.1 1.1.1.284)
Displaying 18 items

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