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SCNpilot_expt_1000_bf_scaffold_2272_curated_13

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 14680..16386

Top 3 Functional Annotations

Value Algorithm Source
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 569.0
  • Bit_score: 1099
  • Evalue 0.0
2-isopropylmalate synthase n=1 Tax=Rhizobium meliloti RepID=UPI0003756375 similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 568.0
  • Bit_score: 1052
  • Evalue 0.0
  • rbh
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] similarity KEGG
DB: KEGG
  • Identity: 89.4
  • Coverage: 568.0
  • Bit_score: 1049
  • Evalue 0.0
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1707
ATGATTTTGAAGACCCACACGCCCAAGCAGGGCATGCCCGAGGCGGCAGTCAAGTACCAGCCCTATCCCACGATCAACATCCCGGACCGCACCTGGCCCGGCAAGACGATCACCGAGGCGCCGATCTGGTGTTCGGTGGACCTGCGCGACGGCAACCAGTCGCTGGTCAACCCGATGGGCCACGACCGCAAGGCCCGCATGTTCCAGCTCCTCATCGACATGGGCTTCAAGGAAATCGAGATCGGCTTCCCCTCGGCCTCGCAGACCGATTTCGATTTTGCCCGCTGGTGCGTCGAGGAGGGCAACGTGCCCGCCGACGTCTCGCTGCAGGTGCTGGTCCAGTGCAGGCCGGAGCTGATCACCCGCACCTTCGAGGCGCTGGAAGGCGCGCATAAGCCGATCATCCATTTCTACAATTCGACCAGCGAATTGCAGCGCCGCGTGGTGTTCGCCAAGGACGTCGCCGGCATCAAGCAGATCGCGACCGATGCGGCCAAGATGATCACCGACATGGCGGCCAAGGCCGGCGGCGGCTATCGCTTCGAATATTCGCCGGAGAGCTTTACCGGCACCGAGCTGGACGTGGCGCTGGAGATCTGCAACGCGGTCGTGGAGATCGTGAAGCCGACGGCCGACAACAAGCTGATCCTCAACCTGCCGTCCACCGTCGAGATGGCGACGCCGAACATCTATGCCGACCAGATCGAATGGATGTGCCGCAACATCGACAACCGCGAGAACGTCATCATCTCGCTGCACCCGCATAACGACCGCGGCACCGGCATCGCGGCCACGGAACTCGGCCTGATGGCCGGCGCGGACCGCGTCGAAGGCACGCTCTTCGGCAATGGCGAGCGCACGGGCAATGTCGACGTCGTCACGCTGGCGCTCAACATGTACACGCAGGGCGTCGATCCCAGGCTCGACTGCACCGACATCGAGCGCATCAAGGCCGTCTACGAATATTCCAACGAGATGGTCATTCCCGAGCGTCACCCTTACGTCGGCGAGCTGGTCTACACGGCCTTCTCCGGCTCGCACCAGGACGCGATCAACAAGGGCATGAAGGCCATCAGACAAGCCAACAAGCCGCTCTGGGAAGTGCCGTACCTGCCGATCGACCCGCAGGACGTCGGCCGCTCCTACGAGGCGATCATCCGCATCAACTCGCAGTCCGGCAAGGGCGGCATCGCCTATATCCTGCAGGAAGACTACGGCATCAACCTGCCGCGCAACCTGCAGGTGGAGTTCCGCGAGGAGATCCAGCGCATCACCGACGAGGAAGGCGTGGAGCTTCCTTCCAAGCGCATCCATGAGAGCTTCATGGAGCGCTACGTCACGCAGCCGGGCACGCGCCTGCGCTTCGTCGACCATCACACCTATCCCGACGGCGAGCACAAGGGCACGCGCATCGTCGCGGCCGAGATCACCGACGGCGGCGAGGGGAAGCGCATCGAGGGCAGGGGCACCGGCCCGATCGACGGCTTCATCAACGCGCTGTCGATCTATCTCGGCATCCCCATGTCCGTCGCCGACTATTCCGAGCACTCGCTCCAGCACGGCTCGAACGCGGCGGCCATCGCCTATGTCGAGGTCGAGCATCCGGGCGGCAAGCTCTTCGGCGTCGGCATCAACACCAACATCGTGACGGCCTCGCTGGAGGCCATCGTCTCGGCCGCCAACCGCGTTCTGGAGATGCGCGGCTGA
PROTEIN sequence
Length: 569
MILKTHTPKQGMPEAAVKYQPYPTINIPDRTWPGKTITEAPIWCSVDLRDGNQSLVNPMGHDRKARMFQLLIDMGFKEIEIGFPSASQTDFDFARWCVEEGNVPADVSLQVLVQCRPELITRTFEALEGAHKPIIHFYNSTSELQRRVVFAKDVAGIKQIATDAAKMITDMAAKAGGGYRFEYSPESFTGTELDVALEICNAVVEIVKPTADNKLILNLPSTVEMATPNIYADQIEWMCRNIDNRENVIISLHPHNDRGTGIAATELGLMAGADRVEGTLFGNGERTGNVDVVTLALNMYTQGVDPRLDCTDIERIKAVYEYSNEMVIPERHPYVGELVYTAFSGSHQDAINKGMKAIRQANKPLWEVPYLPIDPQDVGRSYEAIIRINSQSGKGGIAYILQEDYGINLPRNLQVEFREEIQRITDEEGVELPSKRIHESFMERYVTQPGTRLRFVDHHTYPDGEHKGTRIVAAEITDGGEGKRIEGRGTGPIDGFINALSIYLGIPMSVADYSEHSLQHGSNAAAIAYVEVEHPGGKLFGVGINTNIVTASLEAIVSAANRVLEMRG*