name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2272_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..551
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN94_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83482.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
562..1863
|
Uncharacterized protein {ECO:0000313|EMBL:EYR83480.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003738DA3
rbh
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1856..2989
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE31_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83479.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3067..4746
|
Formate--tetrahydrofolate ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVK0_9RHIZ
rbh
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4783..5289)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYD1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83477.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5385..6134)
|
Extensin-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D313_9RHIZ
rbh
Extensin-like protein {ECO:0000313|EMBL:EYR83476.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extensin-like protein
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6230..6538)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR83475.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU22_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6953..9169
|
Cation transporter {ECO:0000313|EMBL:KDR89012.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
Outer membrane heme receptor
rbh
Outer membrane heme receptor n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q9N2_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9394..11628
|
Anthranilate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETF3_9RHIZ
rbh
Anthranilate synthase {ECO:0000313|EMBL:EYR83474.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EYR83474.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11914..12840
|
Cation diffusion facilitator family transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBP2_9RHIZ
rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EYR83473.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cation diffusion facilitator family transporter
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_11
unknown
|
Not on your lists |
13007..13657
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13710..14288
|
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-dependent Clp protease ClpP n=1 Tax=Rhizobium giardinii RepID=UPI00037E0DE2
rbh
clpP3; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14680..16386
|
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-isopropylmalate synthase n=1 Tax=Rhizobium meliloti RepID=UPI0003756375
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16455..17309)
|
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCR0_9RHIZ
rbh
Putative transmembrane transcriptional regulator {ECO:0000313|EMBL:EYR82251.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane anti-sigma factor
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17312..17830)
|
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EYR82250.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA polymerase sigma70 n=1 Tax=Rhizobium giardinii RepID=UPI0003656CAC
sige3; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17992..18591)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR82249.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B68F1F
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18721..19623)
|
Putative phosphohydrolase {ECO:0000313|EMBL:EYR82248.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN93_9RHIZ
rbh
putative phosphohydrolase, Icc family
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19733..20221
|
NUDIX hydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5M8_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EYR82247.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20223..20939)
|
Putative glutathione S-transferase {ECO:0000313|EMBL:EYR82246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Glutathione transferase n=6 Tax=Rhizobium meliloti RepID=F6BMJ9_SINMB
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21482..22003
|
Putative acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXT5_9RHIZ
rbh
Putative acetyltransferase {ECO:0000313|EMBL:EYR82245.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22174..22710)
|
Putative glyoxalase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV13_9RHIZ
Putative glyoxalase {ECO:0000313|EMBL:EYR82244.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glyoxalase
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22888..24357)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR82243.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein n=1 Tax=Rhizobium meliloti RepID=UPI0003812856
rbh
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2272_curated_23
unknown
|
Not on your lists |
24513..24809
|
This feature has no annotations |