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SCNpilot_expt_1000_bf_scaffold_2272_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2272_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..551
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN94_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83482.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

562..1863
DNA (1302bp) protein (434aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR83480.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003738DA3 rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1856..2989
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE31_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83479.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3067..4746
DNA (1680bp) protein (560aa)
Formate--tetrahydrofolate ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVK0_9RHIZ rbh
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fhs; formate--tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4783..5289)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYD1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83477.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2272_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5385..6134)
DNA (750bp) protein (250aa)
Extensin-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D313_9RHIZ rbh
Extensin-like protein {ECO:0000313|EMBL:EYR83476.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extensin-like protein
SCNpilot_expt_1000_bf_scaffold_2272_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6230..6538)
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR83475.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU22_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2272_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6953..9169
DNA (2217bp) protein (739aa)
Cation transporter {ECO:0000313|EMBL:KDR89012.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
Outer membrane heme receptor rbh
Outer membrane heme receptor n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q9N2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9394..11628
DNA (2235bp) protein (745aa)
Anthranilate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETF3_9RHIZ rbh
Anthranilate synthase {ECO:0000313|EMBL:EYR83474.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EYR83474.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trpE; anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27] rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11914..12840
DNA (927bp) protein (309aa)
Cation diffusion facilitator family transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBP2_9RHIZ rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EYR83473.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cation diffusion facilitator family transporter rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_11
unknown

Not on your lists

13007..13657
DNA (651bp) protein (217aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2272_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13710..14288
DNA (579bp) protein (193aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-dependent Clp protease ClpP n=1 Tax=Rhizobium giardinii RepID=UPI00037E0DE2 rbh
clpP3; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14680..16386
DNA (1707bp) protein (569aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-isopropylmalate synthase n=1 Tax=Rhizobium meliloti RepID=UPI0003756375 rbh
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16455..17309)
DNA (855bp) protein (285aa)
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCR0_9RHIZ rbh
Putative transmembrane transcriptional regulator {ECO:0000313|EMBL:EYR82251.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane anti-sigma factor
SCNpilot_expt_1000_bf_scaffold_2272_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17312..17830)
DNA (519bp) protein (173aa)
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EYR82250.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA polymerase sigma70 n=1 Tax=Rhizobium giardinii RepID=UPI0003656CAC
sige3; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2272_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17992..18591)
DNA (600bp) protein (200aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR82249.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B68F1F
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2272_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18721..19623)
DNA (903bp) protein (301aa)
Putative phosphohydrolase {ECO:0000313|EMBL:EYR82248.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN93_9RHIZ rbh
putative phosphohydrolase, Icc family rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19733..20221
DNA (489bp) protein (163aa)
NUDIX hydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5M8_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EYR82247.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2272_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20223..20939)
DNA (717bp) protein (239aa)
Putative glutathione S-transferase {ECO:0000313|EMBL:EYR82246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione transferase (EC:2.5.1.18); K07393 putative glutathione S-transferase rbh
Glutathione transferase n=6 Tax=Rhizobium meliloti RepID=F6BMJ9_SINMB rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21482..22003
DNA (522bp) protein (174aa)
Putative acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXT5_9RHIZ rbh
Putative acetyltransferase {ECO:0000313|EMBL:EYR82245.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2272_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22174..22710)
DNA (537bp) protein (179aa)
Putative glyoxalase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV13_9RHIZ
Putative glyoxalase {ECO:0000313|EMBL:EYR82244.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glyoxalase
SCNpilot_expt_1000_bf_scaffold_2272_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22888..24357)
DNA (1470bp) protein (490aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR82243.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein n=1 Tax=Rhizobium meliloti RepID=UPI0003812856 rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2272_curated_23
unknown

Not on your lists

24513..24809
DNA (297bp) protein (99aa)

This feature has no annotations

Displaying 23 items

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