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SCNpilot_expt_1000_bf_scaffold_2272_curated_14

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(16455..17309)

Top 3 Functional Annotations

Value Algorithm Source
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCR0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 75.0
  • Coverage: 284.0
  • Bit_score: 430
  • Evalue 1.10e-117
  • rbh
Putative transmembrane transcriptional regulator {ECO:0000313|EMBL:EYR82251.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.0
  • Coverage: 284.0
  • Bit_score: 430
  • Evalue 1.50e-117
putative transmembrane anti-sigma factor similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 284.0
  • Bit_score: 270
  • Evalue 7.70e-70

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 855
GTGGAAAGCACACAGGGTCTCCCGCTCGAGGTGCGGCTGTCGGCCTATCTGGATGGCCAGTTGCCCGAAGCGGAAGTGGAGGAAATCGACGCCATCCTCGCCATCGACGACGATGCGCGCGGCGTCTACGAGAAGCTCAAGCTCGGCAGCGAGTTCGGCGCCCGCGCCTTCGACAGGATGCTGCAGGAGCCGATCCCGCTCGACCTGGTGCGCAACATCAAGGAAGCGGGCAGGAACGAGGACGAGGCGCCCAAGCTGGGTTTCGTCGATGCGCCCGTCGTCCCCCCGCCGGTTTCCCGCCGCAGCGCCCTGTGGCCGCAGGCGCTCGTCGCCTCGCTGGTGATCTTCCTTGCCGGCGGGGCGGCCGGCTACCTGATTTCAGAGCAGAAGCAGGCCACCGTCCAGGCCATCGGCAACCAGTTCGCCCCCGCCCGCACATGGCTCGACGACGTCGCCGAGTATCACCGCATCTATTCCCGCCAGGCCCGCCATCTGGTGGAGGTGCCGGCGAGCGACGCGGCGCATATCGTCGAGTGGCTCTCGGTCAGCACCGGGGTCAAGTTCGCGCTGCCCGATCTTTCCGCCCAGAAGCTCCCCTTCGAGGGCGCCCGCCTGCTCGTTGCCGGCGGCAAGCCGACCGCGCAGCTTCTCTACCGCGACGCCGAGAACGAGATCTTCGCGATCTGTTTCATGCAGAGCGAGCCCGTCGATGACAGGACGGGCCTCGCCGAAAGCATGCGCAACGACATCGGCCTCATCTCCTGGCAGAAGGGCAACGCCGCCTATGTCGTGGTCGGTCCCTCCGCCGATCCCGACCTGGAGCGCATCGCCGAAGTGGTTTCCGCGACGATCTAG
PROTEIN sequence
Length: 285
VESTQGLPLEVRLSAYLDGQLPEAEVEEIDAILAIDDDARGVYEKLKLGSEFGARAFDRMLQEPIPLDLVRNIKEAGRNEDEAPKLGFVDAPVVPPPVSRRSALWPQALVASLVIFLAGGAAGYLISEQKQATVQAIGNQFAPARTWLDDVAEYHRIYSRQARHLVEVPASDAAHIVEWLSVSTGVKFALPDLSAQKLPFEGARLLVAGGKPTAQLLYRDAENEIFAICFMQSEPVDDRTGLAESMRNDIGLISWQKGNAAYVVVGPSADPDLERIAEVVSATI*