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SCNpilot_expt_1000_bf_scaffold_2272_curated_15

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(17312..17830)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EYR82250.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.5
  • Coverage: 172.0
  • Bit_score: 328
  • Evalue 4.90e-87
RNA polymerase sigma70 n=1 Tax=Rhizobium giardinii RepID=UPI0003656CAC similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 172.0
  • Bit_score: 289
  • Evalue 1.80e-75
sige3; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 76.2
  • Coverage: 172.0
  • Bit_score: 271
  • Evalue 2.10e-70

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 519
ATGCGTCCGACGGCAGAATCAAATGAGTTCCGGCGAGAGTTGGTCAATCTGCTGCCGAAGCTGCGCCGTTTCGCCATGACGCTGACGCGCAACGGCAGCGATGCCGACGACCTCGTGCAGGAGGCATGCGAGAGAGCCATCACGCGAAGCCATCTGTGGAACGGGGAAGGCCGGCTGGAAAGCTGGGTTTATGCCATGACGCGCAATCTCTGGGTGGACGAGATCCGCAAGCGAAAGGTCCGCACGGGCTCCGGCACCGTAGATGTCGCCGAGCAGGACAACCTGCACATCGAGGCATCCGCCGACAAGGCGGTCTATGCCAGGCAGTTGCACAAGTTGATCATGACGATGCCGGAGGGGCTTTCGAGCGTCTTCCTGCTGGTCAATGTCGAGGGGCACAGCTACCGGGTGGCGGCGGATATTCTCGGGATACCGGTCGGCACCGTGATGAGCCGGCTTTCGGCAGCCCGCATCCGGCTCGCCACCATGATCTCCGAACAGGCGGAAAGGAGGGCCTGA
PROTEIN sequence
Length: 173
MRPTAESNEFRRELVNLLPKLRRFAMTLTRNGSDADDLVQEACERAITRSHLWNGEGRLESWVYAMTRNLWVDEIRKRKVRTGSGTVDVAEQDNLHIEASADKAVYARQLHKLIMTMPEGLSSVFLLVNVEGHSYRVAADILGIPVGTVMSRLSAARIRLATMISEQAERRA*