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scnpilot_solids1_trim150_scaffold_1425_curated

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1425_curated_1
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1204
DNA (1203bp) protein (401aa)
acetoacetyl-CoA synthase; K01907 acetoacetyl-CoA synthetase [EC:6.2.1.16]
Acetoacetyl-CoA synthase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK51_NAKMY
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:ACV76734.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_1425_curated_2
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1204..2139
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK52_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV76735.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_1425_curated_3
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2269..3843)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X8P8_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EHR51417.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
transmembrane protein
scnpilot_solids1_trim150_scaffold_1425_curated_4
Streptomyces filamentosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3982..4980)
DNA (999bp) protein (333aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=457431 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseosporus NRRL 15998.;"
ribosome small subunit-dependent GTPase A; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Ribosome-associated GTPase n=2 Tax=Streptomyces RepID=V6UJ54_9ACTO
scnpilot_solids1_trim150_scaffold_1425_curated_5
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6135..6758
DNA (624bp) protein (208aa)
Phage integrase family protein n=1 Tax=Nocardioides sp. CF8 RepID=R7XXR0_9ACTO
Phage integrase family protein {ECO:0000313|EMBL:EON24098.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
integrase
scnpilot_solids1_trim150_scaffold_1425_curated_6
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6758..6883
DNA (126bp) protein (42aa)
Phage integrase family protein n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JQ38_9NOCA
Phage integrase family protein {ECO:0000313|EMBL:EHK84257.1}; TaxID=1114960 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans AK37.;"
scnpilot_solids1_trim150_scaffold_1425_curated_7
Mycobacterium arupense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7584..8225
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000365E899
Uncharacterized protein {ECO:0000313|EMBL:KKB98411.1}; TaxID=342002 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium terrae complex.;" source="Mycobacterium arupense.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1425_curated_8
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8222..8995
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 141 RepID=UPI000364F2BA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCF65554.1}; TaxID=1127134 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
scnpilot_solids1_trim150_scaffold_1425_curated_9
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9520..9699
DNA (180bp) protein (60aa)
hypothetical protein; K07171 mRNA interferase [EC:3.1.-.-]
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XQZ6_MICPN
Uncharacterized protein {ECO:0000313|EMBL:BAK37018.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
scnpilot_solids1_trim150_scaffold_1425_curated_10
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9917..10969
DNA (1053bp) protein (351aa)
Uncharacterized protein {ECO:0000313|EMBL:EWT07991.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
scnpilot_solids1_trim150_scaffold_1425_curated_11
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11106..11354
DNA (249bp) protein (83aa)
antitoxin n=1 Tax=Glaciibacter superstes RepID=UPI0003B674CF
Antitoxin MazE6 {ECO:0000313|EMBL:EUA35827.1}; TaxID=1299333 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi 3993.;"
programmed cell death antitoxin
scnpilot_solids1_trim150_scaffold_1425_curated_12
Mycobacterium orygis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11351..11692
DNA (342bp) protein (114aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1305739 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium orygis 112400015.;"
mRNA interferase n=2 Tax=Mycobacterium bovis BCG RepID=G7QX96_MYCBI
hypothetical protein
scnpilot_solids1_trim150_scaffold_1425_curated_13
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11998..12681
DNA (684bp) protein (228aa)
TetR family transcriptional regulator n=1 Tax=Rhodococcus sp. DK17 RepID=UPI00030A085F
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ETT27840.1}; TaxID=1429046 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous ATCC 21198.;"
transcriptional regulator, tetR-family
scnpilot_solids1_trim150_scaffold_1425_curated_14
Amycolicicoccus subflavus, Amycolicicoccus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12668..13216
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) RepID=F6EMJ8_AMYSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF41556.1}; TaxID=443218 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Amycolicicoccus.;" source="Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1).;"
scnpilot_solids1_trim150_scaffold_1425_curated_15
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13387..14073
DNA (687bp) protein (229aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W598_KINRD
coenzyme F420-dependent NADP oxidoreductase; K06988
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:ABS01987.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
scnpilot_solids1_trim150_scaffold_1425_curated_16
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14205..14438)
DNA (234bp) protein (78aa)
biotin attachment protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00036A43D9
Biotin attachment protein {ECO:0000313|EMBL:EWT03170.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
biotin/lipoyl attachment domain-containing protein
scnpilot_solids1_trim150_scaffold_1425_curated_17
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14435..15466)
DNA (1032bp) protein (344aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WZU5_9PSEU
Pyruvate dehydrogenase {ECO:0000313|EMBL:EWT03171.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
scnpilot_solids1_trim150_scaffold_1425_curated_18
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15496..16488)
DNA (993bp) protein (331aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628C72
Acetoin dehydrogenase E1 component alpha subunit {ECO:0000313|EMBL:GAB91663.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
scnpilot_solids1_trim150_scaffold_1425_curated_19
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16635..17360)
DNA (726bp) protein (242aa)
Transcriptional regulator, IclR family n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YBA1_THEBD
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADG88461.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
scnpilot_solids1_trim150_scaffold_1425_curated_20
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17637..18410
DNA (774bp) protein (258aa)
oxidoreductase n=1 Tax=Curtobacterium sp. B18 RepID=UPI000348F4D7
Oxidoreductase {ECO:0000313|EMBL:EYT65815.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
oxidoreductase
scnpilot_solids1_trim150_scaffold_1425_curated_21
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18581..19087)
DNA (507bp) protein (169aa)
AsnC family transcriptional regulator n=1 Tax=Nocardioides sp. CF8 RepID=R7XT05_9ACTO
AsnC family transcriptional regulator {ECO:0000313|EMBL:EYR63960.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
AsnC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1425_curated_22
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19222..20391
DNA (1170bp) protein (390aa)
cystathionine gamma-synthase (EC:2.5.1.48); K01761 methionine-gamma-lyase [EC:4.4.1.11]
Cystathionine gamma-synthase n=1 Tax=Nocardioides sp. CF8 RepID=R7XT44_9ACTO
Cystathionine gamma-synthase {ECO:0000313|EMBL:KGM10547.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
scnpilot_solids1_trim150_scaffold_1425_curated_23
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20530..21132)
DNA (603bp) protein (201aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
rnhA; ribonuclease HI (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9URH2_9ACTO
scnpilot_solids1_trim150_scaffold_1425_curated_24
unknown

Not on your lists

21235..21456
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1425_curated_25
unknown

Not on your lists

21395..22204
DNA (810bp) protein (270aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1425_curated_26
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22104..23039)
DNA (936bp) protein (312aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000255|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000255|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000255|HAMAP-Rule:MF_01876};; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=PSUG_NOCSJ
indigoidine synthase A family protein
scnpilot_solids1_trim150_scaffold_1425_curated_27
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23036..24277)
DNA (1242bp) protein (414aa)
PfkB domain protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SQN2_NOCSJ
ribokinase-like domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ABL84117.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
scnpilot_solids1_trim150_scaffold_1425_curated_28
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24495..25844)
DNA (1350bp) protein (450aa)
gdhA; NADP-specific glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
glutamate dehydrogenase n=1 Tax=Actinomadura atramentaria RepID=UPI00037481B0
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
scnpilot_solids1_trim150_scaffold_1425_curated_29
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26228..30529
DNA (4302bp) protein (1434aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
ATP-dependent helicase HrpA n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X757_NAKMY
ATP-dependent helicase HrpA {ECO:0000313|EMBL:ACV76926.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_1425_curated_30
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30578..30766)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X759_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV76928.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Displaying items 1-30 of 89 in total

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