ggKbase | organisms

Consensus taxonomy: Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_15

Properties

Avg. coverage: 1.00 Longest contig: 69.43 Kbp Bin length: 1.40 Mbp GC content: 65.94 %

Contigs count: 575 Features count: 1744 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 18 / 51 ASCG 5 / 38

Displaying items 151-200 of 575 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_22908_curated Species: Alicycliphilus denitrificans (50%)	2	1578 bp	69.14	1.00	100.38
scnpilot_solids1_trim150_scaffold_30508_curated Species: Acidovorax avenae (50%)	2	1190 bp	63.03	1.00	84.45
scnpilot_solids1_trim150_scaffold_37863_curated Species: Alicycliphilus denitrificans (50%)	2	976 bp	70.80	1.00	98.05
scnpilot_solids1_trim150_scaffold_35046_curated Species: Acidovorax sp. MR-S7 (50%)	2	1151 bp	70.37	1.00	99.04
scnpilot_solids1_trim150_scaffold_22725_curated Species: Acidovorax temperans (50%)	2	1578 bp	67.36	1.00	95.25
scnpilot_solids1_trim150_scaffold_37952_curated Species: GWE1_Burkholderiales_65_30_curated (100%)	2	1034 bp	75.24	1.00	100.39
scnpilot_solids1_trim150_scaffold_22727_curated Species: Acidovorax sp. CF316 (50%)	2	1573 bp	65.67	1.00	85.63
scnpilot_solids1_trim150_scaffold_24445_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1490 bp	67.52	1.00	96.85
scnpilot_solids1_trim150_scaffold_40683_curated Species: Alicycliphilus denitrificans (50%)	2	1039 bp	67.76	1.00	96.44
scnpilot_solids1_trim150_scaffold_24726_curated Species: Castellaniella defragrans (100%)	2	1497 bp	67.33	1.00	89.98
scnpilot_solids1_trim150_scaffold_24744_curated Species: Acidovorax temperans (100%)	2	1482 bp	70.11	1.00	100.00
scnpilot_solids1_trim150_scaffold_13011_curated Species: Acidovorax sp. NO-1 (50%)	2	2340 bp	65.09	1.00	89.87
scnpilot_solids1_trim150_scaffold_29234_curated Species: Alicycliphilus denitrificans (50%)	2	1297 bp	67.08	1.00	102.70
scnpilot_solids1_trim150_scaffold_18073_curated Species: Acidovorax delafieldii (50%)	2	1822 bp	67.01	1.00	94.51
scnpilot_solids1_trim150_scaffold_38749_curated Species: Alicycliphilus denitrificans (50%)	2	1061 bp	62.77	1.00	77.19
scnpilot_solids1_trim150_scaffold_24963_curated Species: Hylemonella gracilis (50%)	2	1395 bp	68.60	1.00	99.78
scnpilot_solids1_trim150_scaffold_43380_curated Species: R_Burkholderiales_69_20 (50%)	2	968 bp	68.80	1.00	90.81
scnpilot_solids1_trim150_scaffold_39169_curated Species: Burkholderiaceae bacterium 26 (50%)	2	1074 bp	68.72	1.00	100.28
scnpilot_solids1_trim150_scaffold_13088_curated Species: Acidovorax sp. JS42 (50%)	2	2333 bp	64.47	1.00	92.84
scnpilot_solids1_trim150_scaffold_27944_curated Species: Acidovorax sp. MR-S7 (50%)	2	1311 bp	65.90	1.00	91.99
scnpilot_solids1_trim150_scaffold_38217_curated Species: Alicycliphilus denitrificans (100%)	2	1065 bp	66.20	1.00	84.51
scnpilot_solids1_trim150_scaffold_25006_curated Species: BJP_08E140C01_Burkholderiales_65_30 (50%)	2	1475 bp	73.76	1.00	101.29
scnpilot_solids1_trim150_scaffold_22192_curated Species: Acidovorax ebreus (50%)	2	1592 bp	66.96	1.00	98.56
scnpilot_solids1_trim150_scaffold_38763_curated Species: Acidovorax sp. JS42 (50%)	2	1138 bp	66.70	1.00	95.96
scnpilot_solids1_trim150_scaffold_40452_curated Species: Delftia tsuruhatensis (50%)	2	1029 bp	64.53	1.00	95.34
scnpilot_solids1_trim150_scaffold_41698_curated Species: Acidovorax sp. MR-S7 (50%)	2	1004 bp	62.95	1.00	89.64
scnpilot_solids1_trim150_scaffold_21408_curated Species: Castellaniella defragrans (50%)	2	1669 bp	73.28	1.00	94.01
scnpilot_solids1_trim150_scaffold_40454_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1042 bp	66.89	1.00	97.89
scnpilot_solids1_trim150_scaffold_15205_curated Species: Hydrogenophaga sp. PBC (100%)	2	2095 bp	73.84	1.00	99.09
scnpilot_solids1_trim150_scaffold_11566_curated Species: Alicycliphilus sp. B1 (50%)	2	2550 bp	67.45	1.00	94.82
scnpilot_solids1_trim150_scaffold_28330_curated Species: Lysobacter dokdonensis (50%)	2	1339 bp	63.33	1.00	83.57
scnpilot_solids1_trim150_scaffold_22583_curated Species: Burkholderia jiangsuensis (50%)	2	1556 bp	57.07	1.00	93.89
scnpilot_solids1_trim150_scaffold_33016_curated Species: Alicycliphilus sp. B1 (100%)	2	1190 bp	68.07	1.00	99.08
scnpilot_solids1_trim150_scaffold_42274_curated Species: Ralstonia pickettii (100%)	2	1001 bp	69.53	1.00	98.90
scnpilot_solids1_trim150_scaffold_36315_curated Species: Acidovorax sp. MR-S7 (50%)	2	1124 bp	64.32	1.00	88.88
scnpilot_solids1_trim150_scaffold_28365_curated Species: Comamonas testosteroni (50%)	2	1318 bp	67.68	1.00	84.22
scnpilot_solids1_trim150_scaffold_26869_curated Species: Acidovorax sp. MR-S7 (50%)	2	1380 bp	68.77	1.00	99.13
scnpilot_solids1_trim150_scaffold_25023_curated Species: Acidovorax sp. CF316 (50%)	2	1468 bp	64.10	1.00	95.84
scnpilot_solids1_trim150_scaffold_34140_curated Species: GWA2_Curvibacter_64_110_curated (50%)	2	1185 bp	67.17	1.00	99.75
scnpilot_solids1_trim150_scaffold_45386_curated Species: Verminephrobacter eiseniae (50%)	2	1188 bp	58.08	1.00	61.87
scnpilot_solids1_trim150_scaffold_41179_curated Species: Acidovorax sp. MR-S7 (50%)	2	1017 bp	67.06	1.00	90.56
scnpilot_solids1_trim150_scaffold_38198_curated Species: Castellaniella defragrans (100%)	2	1041 bp	65.42	1.00	92.51
scnpilot_solids1_trim150_scaffold_36743_curated Species: Delftia acidovorans (50%)	2	1074 bp	70.86	1.00	98.04
scnpilot_solids1_trim150_scaffold_39564_curated Species: Acidovorax delafieldii (50%)	2	1040 bp	69.71	1.00	92.88
scnpilot_solids1_trim150_scaffold_31839_curated Species: Variovorax paradoxus (50%)	2	1255 bp	70.28	1.00	91.31
scnpilot_solids1_trim150_scaffold_34780_curated Species: RIFOXYC2_FULL_Burkholderiales_59_8_curated (50%)	2	1176 bp	68.20	1.00	95.66
scnpilot_solids1_trim150_scaffold_19216_curated Species: Acidovorax sp. MR-S7 (50%)	2	1750 bp	67.54	1.00	99.77
scnpilot_solids1_trim150_scaffold_13340_curated Species: Acidovorax avenae (50%)	2	2280 bp	66.93	1.00	90.66
scnpilot_solids1_trim150_scaffold_22106_curated Species: Alicycliphilus sp. B1 (50%)	2	1620 bp	65.37	1.00	90.93
scnpilot_solids1_trim150_scaffold_13349_curated Species: Acidovorax sp. MR-S7 (50%)	2	2268 bp	67.42	1.00	97.35

Displaying items 151-200 of 575 in total

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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