ggKbase | organisms

Consensus taxonomy: Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_15

Properties

Avg. coverage: 1.00 Longest contig: 69.43 Kbp Bin length: 1.40 Mbp GC content: 65.94 %

Contigs count: 575 Features count: 1744 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 18 / 51 ASCG 5 / 38

Displaying items 201-250 of 575 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_38976_curated Species: Acidovorax sp. JS42 (50%)	2	1033 bp	70.09	1.00	90.90
scnpilot_solids1_trim150_scaffold_31374_curated Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)	2	1225 bp	73.47	1.00	100.16
scnpilot_solids1_trim150_scaffold_14688_curated Species: Acidovorax sp. JS42 (50%)	2	2182 bp	67.55	1.00	98.99
scnpilot_solids1_trim150_scaffold_21903_curated Species: Methylibium petroleiphilum (50%)	2	1624 bp	68.97	1.00	93.29
scnpilot_solids1_trim150_scaffold_23256_curated Species: Acidovorax sp. JS42 (50%)	2	1508 bp	64.32	1.00	100.27
scnpilot_solids1_trim150_scaffold_36804_curated Species: Acidovorax sp. JS42 (50%)	2	1131 bp	69.58	1.00	95.23
scnpilot_solids1_trim150_scaffold_14684_curated Species: Acidovorax sp. MR-S7 (100%)	2	2188 bp	66.54	1.00	94.47
scnpilot_solids1_trim150_scaffold_22356_curated Species: Achromobacter sp. RTa (50%)	2	1539 bp	62.77	1.00	89.28
scnpilot_solids1_trim150_scaffold_40083_curated Species: Burkholderia sp. lig30 (50%)	2	1060 bp	71.04	1.00	91.70
scnpilot_solids1_trim150_scaffold_20447_curated Species: Alicycliphilus denitrificans (100%)	2	1686 bp	69.04	1.00	98.75
scnpilot_solids1_trim150_scaffold_31989_curated Species: Acidovorax sp. JS42 (50%)	2	1229 bp	66.80	1.00	98.37
scnpilot_solids1_trim150_scaffold_36702_curated Species: Rubrivivax gelatinosus (50%)	2	1127 bp	52.09	1.00	41.26
scnpilot_solids1_trim150_scaffold_33999_curated Species: Acidovorax sp. MR-S7 (100%)	2	1165 bp	74.25	1.00	100.43
scnpilot_solids1_trim150_scaffold_16673_curated Species: Pandoraea pnomenusa (50%)	2	1987 bp	61.25	1.00	99.95
scnpilot_solids1_trim150_scaffold_24638_curated Species: Acidovorax sp. MR-S7 (50%)	2	1432 bp	66.13	1.00	86.73
scnpilot_solids1_trim150_scaffold_33884_curated Species: Acidovorax ebreus (50%)	2	1132 bp	66.08	1.00	96.20
scnpilot_solids1_trim150_scaffold_27062_curated Species: Acidovorax sp. JS42 (50%)	2	1377 bp	66.30	1.00	93.46
scnpilot_solids1_trim150_scaffold_40884_curated Species: Alicycliphilus denitrificans (50%)	2	976 bp	65.37	1.00	89.75
scnpilot_solids1_trim150_scaffold_28464_curated Species: R_Burkholderiales_64_960 (50%)	2	1335 bp	70.86	1.00	98.43
scnpilot_solids1_trim150_scaffold_22714_curated Species: Rhodoferax ferrireducens (50%)	2	1544 bp	68.33	1.00	90.74
scnpilot_solids1_trim150_scaffold_24200_curated Species: Alicycliphilus denitrificans (50%)	2	1495 bp	64.55	1.00	95.92
scnpilot_solids1_trim150_scaffold_26092_curated Species: Alicycliphilus sp. B1 (50%)	2	1389 bp	64.15	1.00	91.79
scnpilot_solids1_trim150_scaffold_43494_curated Species: Acidovorax ebreus (100%)	2	851 bp	69.57	1.00	88.84
scnpilot_solids1_trim150_scaffold_26638_curated Species: Acidovorax sp. MR-S7 (100%)	2	1390 bp	70.86	1.00	99.50
scnpilot_solids1_trim150_scaffold_41861_curated Species: Acidovorax sp. CF316 (50%)	2	982 bp	66.40	1.00	80.96
scnpilot_solids1_trim150_scaffold_22600_curated Species: Ralstonia pickettii (50%)	2	1534 bp	66.82	1.00	84.88
scnpilot_solids1_trim150_scaffold_38720_curated Species: Acidovorax sp. JS42 (50%)	2	1077 bp	70.38	1.00	100.00
scnpilot_solids1_trim150_scaffold_22970_curated Species: Alicycliphilus denitrificans (50%)	2	1554 bp	65.96	1.00	96.72
scnpilot_solids1_trim150_scaffold_29614_curated Species: Acidovorax sp. MR-S7 (50%)	2	1230 bp	66.99	1.00	96.59
scnpilot_solids1_trim150_scaffold_41666_curated Species: Acidovorax sp. JS42 (50%)	2	975 bp	69.33	1.00	95.69
scnpilot_solids1_trim150_scaffold_43013_curated Species: Acidovorax sp. MR-S7 (50%)	2	974 bp	61.40	1.00	72.07
scnpilot_solids1_trim150_scaffold_41227_curated Species: Acidovorax avenae (50%)	2	1024 bp	66.99	1.00	100.20
scnpilot_solids1_trim150_scaffold_22483_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1572 bp	72.65	1.00	96.76
scnpilot_solids1_trim150_scaffold_39999_curated Species: Alicycliphilus denitrificans (50%)	2	1003 bp	61.02	1.00	96.31
scnpilot_solids1_trim150_scaffold_34309_curated Species: Acidovorax sp. NO-1 (100%)	2	1178 bp	66.89	1.00	99.07
scnpilot_solids1_trim150_scaffold_24868_curated Species: Alicycliphilus denitrificans (50%)	2	1393 bp	63.53	1.00	91.31
scnpilot_solids1_trim150_scaffold_29721_curated Species: Acidovorax sp. JS42 (50%)	2	1283 bp	67.65	1.00	96.57
scnpilot_solids1_trim150_scaffold_40701_curated Species: Acidovorax sp. MR-S7 (100%)	2	970 bp	69.38	1.00	99.59
scnpilot_solids1_trim150_scaffold_36355_curated Species: Delftia acidovorans (50%)	2	1036 bp	72.10	1.00	95.27
scnpilot_solids1_trim150_scaffold_23434_curated Species: Acidovorax sp. NO-1 (50%)	2	1464 bp	67.08	1.00	96.72
scnpilot_solids1_trim150_scaffold_6104_curated Species: Burkholderia sp. YI23 (50%)	2	4143 bp	67.51	1.00	83.06
scnpilot_solids1_trim150_scaffold_21757_curated Species: Castellaniella defragrans (50%)	2	1580 bp	67.34	1.00	79.37
scnpilot_solids1_trim150_scaffold_32750_curated Species: Alicycliphilus sp. B1 (50%)	2	1184 bp	68.75	1.00	98.82
scnpilot_solids1_trim150_scaffold_31566_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1200 bp	71.08	1.00	100.25
scnpilot_solids1_trim150_scaffold_27373_curated Species: Acidovorax sp. JS42 (100%)	2	1331 bp	69.95	1.00	100.53
scnpilot_solids1_trim150_scaffold_21472_curated Species: Comamonas aquatica (50%)	2	1646 bp	66.22	1.00	97.87
scnpilot_solids1_trim150_scaffold_31160_curated Species: Variovorax paradoxus (50%)	2	1259 bp	68.39	1.00	98.17
scnpilot_solids1_trim150_scaffold_8879_curated Species: RLO_Burkholderiales_65_40 (50%)	2	3128 bp	68.16	1.00	100.70
scnpilot_solids1_trim150_scaffold_29261_curated Species: Acidovorax sp. JS42 (50%)	2	1326 bp	72.40	1.00	102.72
scnpilot_solids1_trim150_scaffold_29513_curated Species: Alicycliphilus denitrificans (50%)	2	1304 bp	65.57	1.00	95.25

Displaying items 201-250 of 575 in total

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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