ggKbase home page

scnpilot_solids1_trim150_scaffold_10_curated

Search features with annotation key words

Displaying items 1-30 of 240 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_10_curated_1
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(193..840)
DNA (648bp) protein (216aa)
Uncharacterized protein n=4 Tax=Vibrio nigripulchritudo RepID=U4DQ31_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:CCN42153.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
scnpilot_solids1_trim150_scaffold_10_curated_2
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(943..1140)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida (strain DOT-T1E) RepID=I7CEZ0_PSEPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFO50449.1}; TaxID=1196325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain DOT-T1E).;"
scnpilot_solids1_trim150_scaffold_10_curated_3
unknown

Not on your lists

comp(2500..2805)
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_10_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2872..3240
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000360CB48
Putative transcriptional regulator {ECO:0000313|EMBL:EJB08022.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
XRE family transcriptional regulator
scnpilot_solids1_trim150_scaffold_10_curated_5
unknown

Not on your lists

comp(3300..3437)
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_10_curated_6
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3729..4721
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TVS0_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM35058.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids1_trim150_scaffold_10_curated_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4746..5423)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF51_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98092.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_10_curated_8
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5531..6109)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002377884
Putative membrane protein {ECO:0000313|EMBL:EXI77487.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
NnrU
scnpilot_solids1_trim150_scaffold_10_curated_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6116..6580)
DNA (465bp) protein (155aa)
cupin domain-containing protein n=1 Tax=Acidovorax radicis RepID=UPI0002378622
cupin domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_10_curated_10
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6658..8178
DNA (1521bp) protein (507aa)
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23129.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AJG23129.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000375675B
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
scnpilot_solids1_trim150_scaffold_10_curated_11
Marinobacter algicola, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8272..9033)
DNA (762bp) protein (254aa)
yhdZ; amino-acid ABC transporter ATP-binding protein-like protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Marinobacter algicola DG893 RepID=A6F1A8_9ALTE
ABC transporter {ECO:0000313|EMBL:EDM47425.1}; TaxID=443152 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter algicola DG893.;"
scnpilot_solids1_trim150_scaffold_10_curated_12
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9066..10181)
DNA (1116bp) protein (372aa)
amino acid ABC transporter permease n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035FEBE8
Amino acid ABC transporter permease {ECO:0000313|EMBL:ENO15093.1}; TaxID=626887 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter nanhaiticus D15-8W.;"
yhdY; inner membrane amino-acid ABC transporter permease yhdY
scnpilot_solids1_trim150_scaffold_10_curated_13
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10178..11374)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003722234
Amino acid ABC transporter permease {ECO:0000313|EMBL:ENO15094.1}; TaxID=626887 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter nanhaiticus D15-8W.;"
amino acid ABC transporter permease; K09970 general L-amino acid transport system permease protein
scnpilot_solids1_trim150_scaffold_10_curated_14
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11505..12533)
DNA (1029bp) protein (343aa)
Glutamate Aspartate periplasmic binding protein GltI n=1 Tax=Agarivorans albus MKT 106 RepID=R9PT35_AGAAL
Glutamate Aspartate periplasmic binding protein GltI {ECO:0000313|EMBL:GAD01731.1}; TaxID=1331007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans albus MKT 106.;"
amino acid ABC transporter periplasmic protein; K09969 general L-amino acid transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_10_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12850..13764
DNA (915bp) protein (305aa)
6-phosphogluconate dehydrogenase NAD-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U137_ALIDB
6-phosphogluconate dehydrogenase
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:GAO23387.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids1_trim150_scaffold_10_curated_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13788..14987)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI0003746629
Major facilitator superfamily {ECO:0000313|EMBL:CDM25799.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ybcL; hypothetical protein; K08164 MFS transporter, DHA1 family, chloramphenicol resistance protein
scnpilot_solids1_trim150_scaffold_10_curated_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15111..15413)
DNA (303bp) protein (101aa)
Transcriptional regulator, ArsR family n=2 Tax=Bacillus coagulans RepID=G2TL59_BACCO
Uncharacterized protein {ECO:0000313|EMBL:CDM25800.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ArsR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_10_curated_18
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15626..16243
DNA (618bp) protein (206aa)
Glutathione S-transferase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2Z9T9_9CAUL
Glutathione S-transferase {ECO:0000313|EMBL:GAD58230.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
glutathione S-transferase domain-containing protein
scnpilot_solids1_trim150_scaffold_10_curated_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16233..18122)
DNA (1890bp) protein (630aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8D8_9GAMM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL95729.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type multidrug transport system, ATPase and permease component
scnpilot_solids1_trim150_scaffold_10_curated_20
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18308..18898
DNA (591bp) protein (197aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|SAAS:SAAS00064138};; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
Trp repressor binding protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QF34_9RHOB
flavodoxin/nitric oxide synthase; K03809 Trp repressor binding protein
scnpilot_solids1_trim150_scaffold_10_curated_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18941..19903
DNA (963bp) protein (321aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F51D64
sulfite oxidase subunit YedY; K07147
scnpilot_solids1_trim150_scaffold_10_curated_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19903..20505
DNA (603bp) protein (201aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXJ4_PUSST
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
membrane protein
scnpilot_solids1_trim150_scaffold_10_curated_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20502..21419
DNA (918bp) protein (306aa)
Ketopantoate reductase PanG {ECO:0000313|EMBL:CDM25609.1}; EC=1.1.1.169 {ECO:0000313|EMBL:CDM25609.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Uncharacterized protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0GAZ1_9BURK
coenzyme F420-dependent NADP oxidoreductase
scnpilot_solids1_trim150_scaffold_10_curated_24
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21407..22180)
DNA (774bp) protein (258aa)
MltA-interacting MipA family protein n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UHC2_ADVKW
MltA-interacting MipA family protein
MltA-interacting MipA family protein {ECO:0000313|EMBL:AFK64410.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
scnpilot_solids1_trim150_scaffold_10_curated_25
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22238..22969)
DNA (732bp) protein (244aa)
Glutamine amidotransferase n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2L1B1_9GAMM
guaA; glutamine amidotransferase
Glutamine amidotransferase {ECO:0000313|EMBL:EPC01429.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
scnpilot_solids1_trim150_scaffold_10_curated_26
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22993..23703)
DNA (711bp) protein (237aa)
Oxidoreductase FAD/NAD(P)-binding n=1 Tax=gamma proteobacterium HdN1 RepID=E1VMP4_9GAMM
Oxidoreductase FAD/NAD(P)-binding
Oxidoreductase FAD/NAD(P)-binding {ECO:0000313|EMBL:CBL46086.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_solids1_trim150_scaffold_10_curated_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23876..24829)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI000303DD1D
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDM25618.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_10_curated_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24959..26179
DNA (1221bp) protein (407aa)
CoA-transferase (EC:2.8.3.-)
CaiB/baiF CoA-transferase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QVM4_9BURK
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CDM25617.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_10_curated_29
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26261..27250
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI00035D906C
TRAP transporter solute receptor {ECO:0000313|EMBL:CDM25616.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TRAP-type C4-dicarboxylate transport system, periplasmic component
scnpilot_solids1_trim150_scaffold_10_curated_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27307..27786
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI0002FE4DD9
TRAP dicarboxylate transporter, DctQ subunit {ECO:0000313|EMBL:CDM25615.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
tripartite ATP-independent periplasmic transporter DctQ
Displaying items 1-30 of 240 in total

View Taxonomy