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scnpilot_solids1_trim150_scaffold_1741_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1741_curated_1
Actinobacillus minor, Actinobacillus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..86
DNA (84bp) protein (28aa)
Elongation factor Tu n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7US03_PSEUP
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000313|EMBL:EER47980.1}; Flags: Fragment;; TaxID=637911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus.;" source="Actinobacillus minor NM305.;"
scnpilot_solids1_trim150_scaffold_1741_curated_2
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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506..817
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UB69_XANAP
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
scnpilot_solids1_trim150_scaffold_1741_curated_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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829..1485
DNA (657bp) protein (219aa)
50S ribosomal protein L3 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7US01_PSEUP
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
scnpilot_solids1_trim150_scaffold_1741_curated_4
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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1488..2090
DNA (603bp) protein (201aa)
50S ribosomal protein L4 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVG9_PSEUU
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328, ECO:0000313|EMBL:KIJ72361.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
50S ribosomal protein L4/L1e; K02926 large subunit ribosomal protein L4
scnpilot_solids1_trim150_scaffold_1741_curated_5
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2087..2386
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F98405
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23
scnpilot_solids1_trim150_scaffold_1741_curated_6
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2397..3224
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVG7_PSEUU
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
scnpilot_solids1_trim150_scaffold_1741_curated_7
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3231..3497
DNA (267bp) protein (89aa)
30S ribosomal protein S19 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000318BC41
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
scnpilot_solids1_trim150_scaffold_1741_curated_8
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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3508..3843
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=2 Tax=Pseudoxanthomonas RepID=E6WVG5_PSEUU
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
scnpilot_solids1_trim150_scaffold_1741_curated_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3846..4598
DNA (753bp) protein (251aa)
30S ribosomal protein S3 n=3 Tax=Stenotrophomonas maltophilia RepID=G0JZ49_STEMA
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
scnpilot_solids1_trim150_scaffold_1741_curated_10
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4602..5015
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=9 Tax=Stenotrophomonas RepID=RL16_STRMK
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
scnpilot_solids1_trim150_scaffold_1741_curated_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5015..5221
DNA (207bp) protein (69aa)
50S ribosomal protein L29 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030BEE8E
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
scnpilot_solids1_trim150_scaffold_1741_curated_12
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5233..5496
DNA (264bp) protein (88aa)
30S ribosomal protein S17 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E81E76
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
scnpilot_solids1_trim150_scaffold_1741_curated_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5512..5880
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URZ1_PSEUP
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
scnpilot_solids1_trim150_scaffold_1741_curated_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5898..6212
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVF9_PSEUU
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
scnpilot_solids1_trim150_scaffold_1741_curated_15
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6214..6756
DNA (543bp) protein (181aa)
50S ribosomal protein L5 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030362B5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
scnpilot_solids1_trim150_scaffold_1741_curated_16
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6767..7072
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URY8_PSEUP
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
scnpilot_solids1_trim150_scaffold_1741_curated_17
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7250..7645
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URY7_PSEUP
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
scnpilot_solids1_trim150_scaffold_1741_curated_18
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7659..8186
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DA52FE
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
scnpilot_solids1_trim150_scaffold_1741_curated_19
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8217..8570
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F33629
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
scnpilot_solids1_trim150_scaffold_1741_curated_20
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8730..9269
DNA (540bp) protein (180aa)
30S ribosomal protein S5 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6F00D
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
scnpilot_solids1_trim150_scaffold_1741_curated_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9262..9447
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D7C2F8
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
scnpilot_solids1_trim150_scaffold_1741_curated_22
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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9452..9889
DNA (438bp) protein (146aa)
50S ribosomal protein L15 id=2431999 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_1741_curated_23
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9897..11246
DNA (1350bp) protein (450aa)
preprotein translocase subunit SecY n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000306E4B9
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Displaying 23 items

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