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scnpilot_solids1_trim150_scaffold_874_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_874_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..730)
DNA (729bp) protein (243aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Rhodanobacter denitrificans RepID=I4WH75_9GAMM
NAD/NADP transhydrogenase beta subunit
scnpilot_solids1_trim150_scaffold_874_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(730..1035)
DNA (306bp) protein (102aa)
Uncharacterized protein n=2 Tax=Rhodanobacter RepID=M4NEV9_9GAMM
hypothetical protein
Pyruvate kinase {ECO:0000313|EMBL:EIM00046.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_874_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1186..1770
DNA (585bp) protein (195aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodanobacter denitrificans RepID=M4NDX3_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG88092.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1767..2177
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00048.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_874_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2181..2723
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBQ6_9GAMM
Protein of unknown function (DUF3106)
Uncharacterized protein {ECO:0000313|EMBL:AGG88090.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2871..3974)
DNA (1104bp) protein (368aa)
NAD/NADP transhydrogenase alpha subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NBV6_9GAMM
NAD/NADP transhydrogenase alpha subunit
NAD/NADP transhydrogenase alpha subunit {ECO:0000313|EMBL:AGG88089.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4099..4515
DNA (417bp) protein (139aa)
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Rhodanobacter denitrificans RepID=I4WH69_9GAMM
Cytidine deaminase {ECO:0000313|EMBL:EIM00051.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_874_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4577..5146
DNA (570bp) protein (190aa)
Nitroreductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WH68_9GAMM
nitroreductase
Nitroreductase {ECO:0000313|EMBL:EIM00052.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_874_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5134..6048
DNA (915bp) protein (305aa)
5'-3' exonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WH67_9GAMM
5'-3' exonuclease (including N-terminal domain of PolI)
5'-3' exonuclease (Including N-terminal domain of PolI) {ECO:0000313|EMBL:AGG88086.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6132..8261)
DNA (2130bp) protein (710aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX2_9GAMM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EIL97168.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_874_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8476..8919
DNA (444bp) protein (148aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBV0_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG88084.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9264..9704
DNA (441bp) protein (147aa)
Class II pilin PilE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCH4_9GAMM
Class II pilin PilE {ECO:0000313|EMBL:EIL97165.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids1_trim150_scaffold_874_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9771..11783
DNA (2013bp) protein (671aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDW5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88082.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11780..13747
DNA (1968bp) protein (656aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJY1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88081.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14295..15572
DNA (1278bp) protein (426aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Rhodanobacter denitrificans RepID=M4NBP6_9GAMM
membrane protein involved in the export of O-antigen and teichoic acid
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:AGG88080.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_16

Not on your lists

15578..16378
DNA (801bp) protein (267aa)
Methyltransferase type 11 domain protein {ECO:0000313|EMBL:EQD71932.1}; EC=2.1.1.- {ECO:0000313|EMBL:EQD71932.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Methyltransferase type 11 domain protein n=2 Tax=mine drainage metagenome RepID=T1BPZ0_9ZZZZ
type 11 methyltransferase
scnpilot_solids1_trim150_scaffold_874_curated_17

Not on your lists

16375..17553
DNA (1179bp) protein (393aa)
Glycosyl transferase family 9 {ECO:0000313|EMBL:EQD71933.1}; EC=2.4.-.- {ECO:0000313|EMBL:EQD71933.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glycosyl transferase family 9 n=1 Tax=mine drainage metagenome RepID=T1BTQ4_9ZZZZ
heptosyltransferase family protein
scnpilot_solids1_trim150_scaffold_874_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17560..18501)
DNA (942bp) protein (314aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDW1_9GAMM
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AGG88077.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18455..19396)
DNA (942bp) protein (314aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJX7_9GAMM
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AGG88076.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19701..20948)
DNA (1248bp) protein (416aa)
Glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBU0_9GAMM
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AGG88074.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_874_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20941..21795)
DNA (855bp) protein (285aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ1_9GAMM
glycosyl transferase
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL97152.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_874_curated_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22062..22352
DNA (291bp) protein (97aa)
DNA polymerase, beta-like region n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q11ZT4_POLSJ
DNA polymerase, beta-like region; K07075
DNA polymerase, beta-like region {ECO:0000313|EMBL:ABE47208.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
scnpilot_solids1_trim150_scaffold_874_curated_23
Simonsiella muelleri, Simonsiella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22349..22717
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Simonsiella muelleri ATCC 29453 RepID=V9H7H6_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EFG30057.2}; TaxID=641147 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Simonsiella.;" source="Simonsiella muelleri ATCC 29453.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_874_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23125..24849
DNA (1725bp) protein (575aa)
Type IV-A pilus assembly ATPase PilB n=2 Tax=Rhodanobacter RepID=I4WIZ4_9GAMM
Type IV-A pilus assembly ATPase PilB {ECO:0000313|EMBL:EIL97149.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
type IV-A pilus assembly ATPase PilB
scnpilot_solids1_trim150_scaffold_874_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25267..26538
DNA (1272bp) protein (424aa)
Type II secretory pathway, component PulF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCF7_9GAMM
Type II secretory pathway, component PulF {ECO:0000313|EMBL:EIL97148.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
type II secretory pathway, component PulF
scnpilot_solids1_trim150_scaffold_874_curated_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26606..26998
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV20_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91061.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_874_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27009..27866
DNA (858bp) protein (286aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ7_9GAMM
scnpilot_solids1_trim150_scaffold_874_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27863..28483
DNA (621bp) protein (207aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Dephospho-CoA kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJW8_9GAMM
dephospho-CoA kinase
scnpilot_solids1_trim150_scaffold_874_curated_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28607..28996)
DNA (390bp) protein (130aa)
thiamine monophosphate synthase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
Thiamine monophosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ9_9GAMM
Thiamine monophosphate synthase {ECO:0000313|EMBL:EIL97144.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_874_curated_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29023..29511)
DNA (489bp) protein (163aa)
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Dihydrofolate reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBN4_9GAMM
Displaying items 1-30 of 48 in total

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