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scnpilot_solids1_trim150_scaffold_304_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_304_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..416)
DNA (414bp) protein (138aa)
Transketolase domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM90_9GAMM
Transketolase domain-containing protein {ECO:0000313|EMBL:EIM00582.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
scnpilot_solids1_trim150_scaffold_304_curated_2
unknown

Not on your lists

626..1018
DNA (393bp) protein (131aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_304_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1436..2047)
DNA (612bp) protein (204aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WL87_9GAMM
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGG88427.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2044..2526)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKZ5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88426.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2523..3065)
DNA (543bp) protein (181aa)
Putative GCN5-related N-acetyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM87_9GAMM
Putative GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EIM00579.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyltransferase, ribosomal protein N-acetylase
scnpilot_solids1_trim150_scaffold_304_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3279..4382)
DNA (1104bp) protein (368aa)
Glutaryl-CoA dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM86_9GAMM
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:EIM00578.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acyl-CoA dehydrogenase
scnpilot_solids1_trim150_scaffold_304_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4538..5413
DNA (876bp) protein (292aa)
Drug-metabolite transporter superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM85_9GAMM
Drug-metabolite transporter superfamily protein {ECO:0000313|EMBL:EIM00577.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
EamA-like transporter family
scnpilot_solids1_trim150_scaffold_304_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5435..6358)
DNA (924bp) protein (308aa)
5'-nucleotidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WL82_9GAMM
5'-nucleotidase
5'-nucleotidase {ECO:0000313|EMBL:AGG88422.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6418..7179)
DNA (762bp) protein (254aa)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WL81_9GAMM
putative sugar kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_304_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7435..12369)
DNA (4935bp) protein (1645aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2)
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:AGG88420.1}; EC=1.4.1.2 {ECO:0000313|EMBL:AGG88420.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NAD-specific glutamate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCK1_9GAMM
scnpilot_solids1_trim150_scaffold_304_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12870..14051
DNA (1182bp) protein (394aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NCN6_9GAMM
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGG88419.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14064..17231
DNA (3168bp) protein (1056aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WL78_9GAMM
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:AGG88418.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17435..18595)
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WL77_9GAMM
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AGG88417.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18728..19657
DNA (930bp) protein (310aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM77_9GAMM
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EIM00569.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylase involved in ubiquinone/menaquinone biosynthesis
scnpilot_solids1_trim150_scaffold_304_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19709..20788
DNA (1080bp) protein (360aa)
Cobalamin-dependent methionine synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WL75_9GAMM
cobalamin-dependent methionine synthase I
Cobalamin-dependent methionine synthase I {ECO:0000313|EMBL:AGG88415.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20790..23483
DNA (2694bp) protein (898aa)
methionine synthase (B12-dependent) (EC:2.1.1.13)
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:AGG88414.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AGG88414.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Methionine synthase (B12-dependent) n=1 Tax=Rhodanobacter denitrificans RepID=M4NCN2_9GAMM
scnpilot_solids1_trim150_scaffold_304_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23583..23924)
DNA (342bp) protein (114aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WL73_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG88413.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24375..28163)
DNA (3789bp) protein (1263aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTS8_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG88407.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28221..29498)
DNA (1278bp) protein (426aa)
ECF subfamily RNA polymerase sigma factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WTS7_9GAMM
RNA polymerase, sigma subunit, ECF family
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AGG88406.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29625..30044)
DNA (420bp) protein (140aa)
DGPFAETKE family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM71_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_304_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30194..33652
DNA (3459bp) protein (1153aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA helicase/exodeoxyribonuclease V, gamma subunit (EC:3.1.11.5)
Exodeoxyribonuclease V subunit gamma n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM70_9GAMM
scnpilot_solids1_trim150_scaffold_304_curated_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33649..37230
DNA (3582bp) protein (1194aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Exodeoxyribonuclease V subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM69_9GAMM
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
scnpilot_solids1_trim150_scaffold_304_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37227..39062
DNA (1836bp) protein (612aa)
DNA helicase/exodeoxyribonuclease V, alpha subunit (EC:3.1.11.5)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NEM1_9GAMM
scnpilot_solids1_trim150_scaffold_304_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39130..39576)
DNA (447bp) protein (149aa)
PilE protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM67_9GAMM
PilE protein {ECO:0000313|EMBL:EIM00559.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids1_trim150_scaffold_304_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39589..43326)
DNA (3738bp) protein (1246aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM66_9GAMM
Type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:EIM00558.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1
scnpilot_solids1_trim150_scaffold_304_curated_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43398..44024)
DNA (627bp) protein (209aa)
Putative Tfp pilus assembly protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM65_9GAMM
Putative Tfp pilus assembly protein {ECO:0000313|EMBL:EIM00557.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Tfp pilus assembly protein PilX
scnpilot_solids1_trim150_scaffold_304_curated_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44026..45084)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM64_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00556.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids1_trim150_scaffold_304_curated_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45081..45581)
DNA (501bp) protein (167aa)
Type IV pilus modification protein PilV n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM63_9GAMM
Type IV pilus modification protein PilV {ECO:0000313|EMBL:EIM00555.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
type IV pilus modification protein PilV
scnpilot_solids1_trim150_scaffold_304_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45578..46204)
DNA (627bp) protein (209aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR7_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG88396.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_304_curated_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46468..48315)
DNA (1848bp) protein (616aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM61_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:EIM00553.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
diguanylate cyclase (GGDEF) domain-containing protein
Displaying items 1-30 of 36 in total

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