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scnpilot_solids1_trim150_scaffold_1746_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1746_curated_1
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(110..802)
DNA (693bp) protein (231aa)
aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13]
Aspartate racemase n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4KB75_THASP
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_solids1_trim150_scaffold_1746_curated_2
unknown

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1055..1924
DNA (870bp) protein (290aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1746_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2177..3061)
DNA (885bp) protein (295aa)
Fimbrial protein (Pilin) n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGG3_9GAMM
Fimbrial protein (Pilin) {ECO:0000313|EMBL:EIL98554.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_1746_curated_4
unknown

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comp(3171..3356)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1746_curated_5
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3427..3987)
DNA (561bp) protein (187aa)
Endoribonuclease L-PSP n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3C0Z1_STRMB
endoribonuclease L-PSP
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_1746_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4580..6250)
DNA (1671bp) protein (557aa)
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Urocanate hydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS18_9GAMM
scnpilot_solids1_trim150_scaffold_1746_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6715..7251
DNA (537bp) protein (179aa)
Ketosteroid isomerase-like enzyme n=1 Tax=Rhodanobacter denitrificans RepID=I4WS16_9GAMM
ketosteroid isomerase-like enzyme
Ketosteroid isomerase-like enzyme {ECO:0000313|EMBL:AGG89444.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1746_curated_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7384..7950
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WS15_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1746_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8109..9611
DNA (1503bp) protein (501aa)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (EC:3.2.2.21 2.1.1.63)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NH75_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1746_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9608..10150
DNA (543bp) protein (181aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPC7_9GAMM
O-6-methylguanine DNA methyltransferase
scnpilot_solids1_trim150_scaffold_1746_curated_11
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10328..10807)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=5 Tax=Burkholderia pseudomallei RepID=Q3JID0_BURP1
hypothetical protein; K09958 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EDO88924.1}; TaxID=360118 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei 406e.;"
scnpilot_solids1_trim150_scaffold_1746_curated_12
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10963..11562
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family n=2 Tax=Ralstonia pickettii RepID=B2UJ51_RALPJ
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23834.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1746_curated_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11693..12274
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E1747C
Uncharacterized protein {ECO:0000313|EMBL:AIF47817.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1746_curated_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12258..13679
DNA (1422bp) protein (474aa)
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345809B
Uncharacterized protein {ECO:0000313|EMBL:AIF47816.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_1746_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13689..14105)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WS12_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89449.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1746_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14157..15419
DNA (1263bp) protein (421aa)
Nucleotide pyrophosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS11_9GAMM
putative AP superfamily protein
Putative AP superfamily protein {ECO:0000313|EMBL:AGG89450.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1746_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15481..16728)
DNA (1248bp) protein (416aa)
Major facilitator family transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPC4_9GAMM
Major facilitator family transporter {ECO:0000313|EMBL:EIM01316.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
arabinose efflux permease family protein
scnpilot_solids1_trim150_scaffold_1746_curated_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16810..17280)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPC3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01315.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1746_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17360..18136)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIF9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89453.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 19 items

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