ggKbase home page

scnpilot_solids1_trim150_scaffold_1564_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1564_curated_1
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..662)
DNA (660bp) protein (220aa)
disulfide isomerase; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
Disulfide isomerase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW74_PSEUP
Thiol:disulfide interchange protein DsbC {ECO:0000313|EMBL:KGQ20839.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
scnpilot_solids1_trim150_scaffold_1564_curated_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(762..1724)
DNA (963bp) protein (321aa)
tyrosine recombinase XerD n=1 Tax=Xanthomonas arboricola RepID=UPI0003632EB3
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
xerD; site-specific tyrosine recombinase XerD; K04763 integrase/recombinase XerD
scnpilot_solids1_trim150_scaffold_1564_curated_3
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1807..2280
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UVR8_PSEUP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AER55185.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1564_curated_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2297..3067
DNA (771bp) protein (257aa)
CAAX amino terminal protease family n=1 Tax=Rhodanobacter denitrificans RepID=M4NF62_9GAMM
CAAX amino terminal protease family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1564_curated_5
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3064..4161)
DNA (1098bp) protein (366aa)
membrane protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI000365E76B
Membrane protein {ECO:0000313|EMBL:KGM55194.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
permease YjgP/YjgQ family protein; K11720 lipopolysaccharide export system permease protein
scnpilot_solids1_trim150_scaffold_1564_curated_6
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4158..5237)
DNA (1080bp) protein (360aa)
membrane protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI000381A39D
Permease {ECO:0000313|EMBL:KGQ20835.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
YjgP/YjgQ family permease; K07091 lipopolysaccharide export system permease protein
scnpilot_solids1_trim150_scaffold_1564_curated_7
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5405..6886
DNA (1482bp) protein (494aa)
pepA; cytosol aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1]
multifunctional aminopeptidase A n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000374A42A
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
scnpilot_solids1_trim150_scaffold_1564_curated_8
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6982..7407
DNA (426bp) protein (142aa)
holC; DNA polymerase III subunit chi; K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III chi subunit HolC id=2940898 bin=GWF1_Xanthomonadales_69_6 species=Xylella fastidiosa genus=Xylella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KFL35968.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
scnpilot_solids1_trim150_scaffold_1564_curated_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7509..10388
DNA (2880bp) protein (960aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
valyl-tRNA synthetase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F1249B
scnpilot_solids1_trim150_scaffold_1564_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10449..11801
DNA (1353bp) protein (451aa)
Diguanylate cyclase n=2 Tax=Alicycliphilus denitrificans RepID=E8U085_ALIDB
PAS/PAC sensor-containing diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADU98633.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_1564_curated_11
unknown

Not on your lists

11921..12286
DNA (366bp) protein (122aa)

This feature has no annotations

Displaying 11 items

View Taxonomy