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scnpilot_solids2_trim150_scaffold_1034_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1034_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

583..1824
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XDC3_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL53879.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
scnpilot_solids2_trim150_scaffold_1034_curated_2
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1821..2303
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TNX4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65497.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein; K09128 hypothetical protein
scnpilot_solids2_trim150_scaffold_1034_curated_3
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2300..3502
DNA (1203bp) protein (401aa)
Capsule synthesis protein, CapA n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IU13_FRASU
Uncharacterized protein {ECO:0000313|EMBL:AJC60078.1}; TaxID=1262452 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
capsule synthesis protein CapA; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein)
scnpilot_solids2_trim150_scaffold_1034_curated_4
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3530..4903
DNA (1374bp) protein (458aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AAF0_PSEF1
Strain MEJ086 contig_63, whole genome shotgun sequence {ECO:0000313|EMBL:KIP96269.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
major facilitator superfamily protein; K03762 MFS transporter, MHS family, proline/betaine transporter
scnpilot_solids2_trim150_scaffold_1034_curated_5
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4928..5713
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KDW3_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH34728.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
scnpilot_solids2_trim150_scaffold_1034_curated_6
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5797..7287)
DNA (1491bp) protein (497aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X996_NAKMY
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ACV77164.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1034_curated_7
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7402..7623)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XFY4_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV78095.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1034_curated_8
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7692..8165
DNA (474bp) protein (158aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XFY3_NAKMY
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACV78094.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_1034_curated_9
unknown

Not on your lists

8206..8346
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1034_curated_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9249..9923)
DNA (675bp) protein (225aa)
UPI0003CE76FC related cluster n=1 Tax=unknown RepID=UPI0003CE76FC
Thiamine pyrophosphate-binding protein {ECO:0000313|EMBL:ESW94150.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
thiamine pyrophosphate-requiring enzyme
scnpilot_solids2_trim150_scaffold_1034_curated_11
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9939..10469)
DNA (531bp) protein (177aa)
Sulfopyruvate decarboxylase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZCP7_METPB
sulfopyruvate decarboxylase
Sulfopyruvate decarboxylase {ECO:0000313|EMBL:ACB79409.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_1034_curated_12
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10609..11424)
DNA (816bp) protein (272aa)
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein id=24582430 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stackebrandtia nassauensis genus=Stackebrandtia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative transport system permease abc transporter protein {ECO:0000313|EMBL:EAU41697.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
putative transport system permease abc transporter protein; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_1034_curated_13
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11409..12197)
DNA (789bp) protein (263aa)
ABC transporter related protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PX12_STANL
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADD45236.1}; Flags: Precursor;; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
scnpilot_solids2_trim150_scaffold_1034_curated_14
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12291..13094)
DNA (804bp) protein (268aa)
Putative aliphatic sulfonates transport permease protein SsuC n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S4A395_9ACTO
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein
Putative aliphatic sulfonates transport permease protein SsuC {ECO:0000313|EMBL:EPH45175.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
scnpilot_solids2_trim150_scaffold_1034_curated_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13338..14483)
DNA (1146bp) protein (382aa)
ABC-type nitrate/sulfonate/bicarbonate transporter periplasmic proteins-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2ME48_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transporter periplasmic proteins-like protein {ECO:0000313|EMBL:EKF20456.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
scnpilot_solids2_trim150_scaffold_1034_curated_16
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15330..16265
DNA (936bp) protein (312aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1352941 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
pyrDI; dihydroorotate oxidase catalytic subunit (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
hypothetical protein n=1 Tax=Streptomyces RepID=UPI0003784511
scnpilot_solids2_trim150_scaffold_1034_curated_17
Arthrobacter arilaitensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16262..17134
DNA (873bp) protein (291aa)
Putative dihydroorotate oxidase electron transfer subunit n=1 Tax=Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117) RepID=E1W0E9_ARTAR
pyrDII; dihydroorotate oxidase electron transfer subunit; K02823 dihydroorotate dehydrogenase electron transfer subunit
Putative dihydroorotate oxidase electron transfer subunit {ECO:0000313|EMBL:CBT77352.1}; TaxID=861360 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 /; Re117).;"
scnpilot_solids2_trim150_scaffold_1034_curated_18
unknown

Not on your lists

17131..17682
DNA (552bp) protein (184aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1034_curated_19
Arthrobacter arilaitensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17715..18209
DNA (495bp) protein (165aa)
allantoate deiminase (EC:3.5.3.9)
Putative allantoate deiminase {ECO:0000313|EMBL:CBT77351.1}; EC=3.5.3.9 {ECO:0000313|EMBL:CBT77351.1};; TaxID=861360 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 /; Re117).;"
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI000381568E
scnpilot_solids2_trim150_scaffold_1034_curated_20
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18190..19005
DNA (816bp) protein (272aa)
allantoate deiminase (EC:3.5.3.9)
hypothetical protein n=1 Tax=Streptomyces sp. CNS335 RepID=UPI00037279ED
Uncharacterized protein {ECO:0000313|EMBL:EST26802.1}; TaxID=1352941 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
scnpilot_solids2_trim150_scaffold_1034_curated_21
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19024..20364
DNA (1341bp) protein (447aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1352941 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
pyrC; dihydroorotase (EC:3.5.2.3)
hypothetical protein n=1 Tax=Streptomyces sp. CNQ766 RepID=UPI00036266D7
scnpilot_solids2_trim150_scaffold_1034_curated_22

Not on your lists

20828..21664
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI00038285CA
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EQD39070.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
IclR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1034_curated_23
unknown

Not on your lists

21704..22186
DNA (483bp) protein (161aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1034_curated_24
Streptomyces lividans, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22845..24314
DNA (1470bp) protein (490aa)
2SCK31.31; dehydrogenase; K13481 xanthine dehydrogenase small subunit [EC:1.17.1.4]
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A n=2 Tax=Streptomyces lividans RepID=S1T3E9_STRLI
Dehydrogenase {ECO:0000313|EMBL:AIJ13694.1}; TaxID=457428 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lividans TK24.;"
scnpilot_solids2_trim150_scaffold_1034_curated_25
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24311..26755
DNA (2445bp) protein (815aa)
Xanthine dehydrogenase, molybdopterin binding subunit {ECO:0000313|EMBL:AFR09572.1}; EC=1.17.1.4 {ECO:0000313|EMBL:AFR09572.1};; TaxID=1205910 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
xdhB; xanthine dehydrogenase, molybdopterin binding subunit (EC:1.17.1.4)
aldehyde oxidase n=1 Tax=Nocardiopsis alba RepID=UPI00034DC18F
scnpilot_solids2_trim150_scaffold_1034_curated_26
Streptomyces griseus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26748..27758
DNA (1011bp) protein (337aa)
Xanthine dehydrogenase accessory protein XdhC n=1 Tax=Streptomyces griseus XylebKG-1 RepID=G0PU16_STRGR
Xanthine dehydrogenase accessory protein XdhC {ECO:0000313|EMBL:EGE44705.1}; TaxID=649189 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus XylebKG-1.;"
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
scnpilot_solids2_trim150_scaffold_1034_curated_27
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27845..28354)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI000366C96F
Uncharacterized protein {ECO:0000313|EMBL:KDN21526.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1034_curated_28
Corynebacterium glutamicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28514..28813
DNA (300bp) protein (100aa)
ArsR family transcriptional regulator n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B6F5E4
putative transcriptional regulator, ArsR-family
Predicted transcriptional regulators {ECO:0000313|EMBL:BAC00176.1}; TaxID=196627 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /; LMG 3730 / NCIMB 10025).;"
scnpilot_solids2_trim150_scaffold_1034_curated_29
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28810..29904
DNA (1095bp) protein (365aa)
cobalt transporter n=1 Tax=Microbacterium sp. B19 RepID=UPI000348D7B7
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ERK71129.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
cation diffusion facilitator family transporter
scnpilot_solids2_trim150_scaffold_1034_curated_30
Corynebacterium singulare, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30364..31548
DNA (1185bp) protein (395aa)
Uncharacterized protein n=3 Tax=Corynebacterium RepID=U7KXG0_9CORY
Fe-S oxidoreductase {ECO:0000313|EMBL:AJI79924.1}; TaxID=161899 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium singulare.;"
hypothetical protein
Displaying items 1-30 of 40 in total

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