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scnpilot_solids2_trim150_scaffold_915_curated

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_915_curated_1
unknown

Not on your lists

2..844
DNA (843bp) protein (281aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_915_curated_2
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

848..2131
DNA (1284bp) protein (428aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomic
Gamma-glutamyl phosphate reductase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I6G5_RHOVT
scnpilot_solids2_trim150_scaffold_915_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2128..2778
DNA (651bp) protein (217aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase; K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036C6F24
scnpilot_solids2_trim150_scaffold_915_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3076..3357
DNA (282bp) protein (94aa)
Ribosomal silencing factor RsfS n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AKW8_MARMM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
iojap family protein; K09710 ribosome-associated protein
scnpilot_solids2_trim150_scaffold_915_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3363..3845
DNA (483bp) protein (161aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Methyltransferase RlmH n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RQ68_9RHIZ
scnpilot_solids2_trim150_scaffold_915_curated_6
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4110..4430)
DNA (321bp) protein (107aa)
Lipoprotein, putative n=1 Tax=Photobacterium sp. AK15 RepID=L8J895_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
scnpilot_solids2_trim150_scaffold_915_curated_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4643..5323
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X177_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34012.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_915_curated_8
unknown

Not on your lists

5646..5918
DNA (273bp) protein (91aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_915_curated_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6152..6631
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J6X2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78826.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
dehydratase
scnpilot_solids2_trim150_scaffold_915_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6635..7387)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRG6_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62499.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_915_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7384..7713)
DNA (330bp) protein (110aa)
Chromosomal replication initiator DnaA domain n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRG5_PARL1
chromosomal replication initiator DnaA domain-containing protein
Chromosomal replication initiator DnaA domain {ECO:0000313|EMBL:ABS62498.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_915_curated_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8039..9640)
DNA (1602bp) protein (534aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Multi-sensor signal transduction histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTX9_9PROT
scnpilot_solids2_trim150_scaffold_915_curated_13
bacterium YEK0313, Bacteria

Not on your lists

9881..11647
DNA (1767bp) protein (589aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
multi-sensor signal transduction histidine kinase (EC:2.7.3.-); K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037214B3
scnpilot_solids2_trim150_scaffold_915_curated_14
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11822..12574
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037543FC
Uncharacterized protein {ECO:0000313|EMBL:GAO38992.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_915_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12574..12906
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH0_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62503.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_915_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12946..13167
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VHS3_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU44267.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids2_trim150_scaffold_915_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13170..13532
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N5Z9_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE28261.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
scnpilot_solids2_trim150_scaffold_915_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13600..15192
DNA (1593bp) protein (531aa)
Peptide chain release factor 3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH2_PARL1
peptide chain release factor 3; K02837 peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_915_curated_19
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15518..16360)
DNA (843bp) protein (281aa)
putative enoyl-CoA hydratase (EC:4.2.1.17)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0003798246
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIE52814.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
scnpilot_solids2_trim150_scaffold_915_curated_20
unknown

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comp(16431..16802)
DNA (372bp) protein (124aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_915_curated_21
unknown

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comp(16957..17730)
DNA (774bp) protein (258aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_915_curated_22
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17898..19073)
DNA (1176bp) protein (392aa)
ldc; lysine (EC:4.1.1.17 4.1.1.18); K01581 ornithine decarboxylase [EC:4.1.1.17]
Lysine {ECO:0000313|EMBL:ACI98761.1}; EC=4.1.1.17 {ECO:0000313|EMBL:ACI98761.1};; EC=4.1.1.18 {ECO:0000313|EMBL:ACI98761.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Lysine n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMU5_RHOCS
scnpilot_solids2_trim150_scaffold_915_curated_23
unknown

Not on your lists

19178..19306
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_915_curated_24
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19379..20719)
DNA (1341bp) protein (447aa)
MATE efflux family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKQ5_MESCW
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADV14969.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_915_curated_25
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21017..21508)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003768043
Conserved protein {ECO:0000313|EMBL:GAK45133.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_915_curated_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21495..23168)
DNA (1674bp) protein (558aa)
sulfite reductase; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
Sulfite reductase (Ferredoxin) {ECO:0000313|EMBL:ABS62512.1}; EC=1.8.7.1 {ECO:0000313|EMBL:ABS62512.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Sulfite reductase (Ferredoxin) n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH9_PARL1
scnpilot_solids2_trim150_scaffold_915_curated_27
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23155..23520)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DIZ0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EJW22048.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_915_curated_28
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23809..24405
DNA (597bp) protein (199aa)
Tetracycline repressor protein class H n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3CB95_STRMB
Tetracycline repressor protein class H {ECO:0000313|EMBL:EMF01317.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_915_curated_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24412..25197)
DNA (786bp) protein (262aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI1_PARL1
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS62514.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_915_curated_30
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25194..25943)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036C6EB9
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACE99030.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Displaying items 1-30 of 47 in total

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