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scnpilot_solids2_trim150_scaffold_419_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_419_curated_1
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..322
DNA (321bp) protein (107aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CX6_MESSB
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:ABG64749.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_419_curated_2

Not on your lists

369..893
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035F4B60
Uncharacterized protein {ECO:0000313|EMBL:KKO12687.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Domain of unknown function (DUF4149)
scnpilot_solids2_trim150_scaffold_419_curated_3
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(907..1329)
DNA (423bp) protein (141aa)
nucleoside diphosphate kinase regulator n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346C882
Nucleoside diphosphate kinase regulator {ECO:0000313|EMBL:KJR64054.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
GreA/GreB family elongation factor; K06140 regulator of nucleoside diphosphate kinase
scnpilot_solids2_trim150_scaffold_419_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1371..1850)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003741716
Uncharacterized protein {ECO:0000313|EMBL:EKS41073.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_419_curated_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2146..2856
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003715452
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO40152.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids2_trim150_scaffold_419_curated_6
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2859..3440
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI000382441A
Uncharacterized protein {ECO:0000313|EMBL:KER35315.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_419_curated_7
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3477..3929
DNA (453bp) protein (151aa)
Cytochrome c2 n=1 Tax=Sphingobium indicum B90A RepID=I5BGR2_9SPHN
Cytochrome c2 {ECO:0000313|EMBL:EIM68764.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
hypothetical protein; K08738 cytochrome c
scnpilot_solids2_trim150_scaffold_419_curated_8
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3948..5801)
DNA (1854bp) protein (618aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
dihydroxy-acid dehydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036A7E64
scnpilot_solids2_trim150_scaffold_419_curated_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6004..6651
DNA (648bp) protein (216aa)
ribonuclease D (EC:3.1.26.3); K03684 ribonuclease D [EC:3.1.13.5]
Ribonuclease D n=1 Tax=Oceanibaculum indicum P24 RepID=K2K1Y7_9PROT
Ribonuclease D {ECO:0000313|EMBL:EKE76879.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
scnpilot_solids2_trim150_scaffold_419_curated_10
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6845..7876
DNA (1032bp) protein (344aa)
phosphosugar isomerase; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000360E4BD
Hypothetical phosphosugar isomerase AQ_1546 {ECO:0000313|EMBL:BAE52737.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_solids2_trim150_scaffold_419_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7876..8571
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI5_PARL1
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Uncharacterized protein {ECO:0000313|EMBL:ABS61818.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_419_curated_12
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8568..9107
DNA (540bp) protein (180aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1Q0_9BRAD
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
OstA-like protein; K09774 lipopolysaccharide export system protein LptA
scnpilot_solids2_trim150_scaffold_419_curated_13
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9149..9949
DNA (801bp) protein (267aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J1L1_9PROT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE76876.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
scnpilot_solids2_trim150_scaffold_419_curated_14
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9974..11491
DNA (1518bp) protein (506aa)
RNA polymerase sigma-54 factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ3_PHEZH
rpoN; RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_419_curated_15
alpha proteobacterium RS24, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11624..11953
DNA (330bp) protein (110aa)
Gluconokinase protein {ECO:0000313|EMBL:ERL46765.1}; EC=2.7.1.12 {ECO:0000313|EMBL:ERL46765.1};; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
Gluconokinase protein n=1 Tax=alpha proteobacterium RS24 RepID=U2WT98_9PROT
sigma-54 modulation protein
scnpilot_solids2_trim150_scaffold_419_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11975..12448
DNA (474bp) protein (158aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI0_PARL1
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ABS61813.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_419_curated_17
unknown

Not on your lists

comp(12527..12793)
DNA (267bp) protein (89aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_419_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12867..13304)
DNA (438bp) protein (146aa)
Heat shock protein Hsp20 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPH8_PARL1
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABS61811.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_419_curated_19
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13537..15309
DNA (1773bp) protein (591aa)
Para-aminobenzoate synthase subunit I; K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
Para-aminobenzoate synthase, subunit I n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J996_HYPSM
Para-aminobenzoate synthase, subunit I {ECO:0000313|EMBL:CCB67413.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_solids2_trim150_scaffold_419_curated_20
unknown

Not on your lists

comp(15368..15751)
DNA (384bp) protein (128aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_419_curated_21
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15748..17250)
DNA (1503bp) protein (501aa)
oxidoreductase n=1 Tax=Burkholderia bryophila RepID=UPI0003764870
GMC oxidoreductase
GMC oxidoreductase {ECO:0000313|EMBL:AFT84650.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
scnpilot_solids2_trim150_scaffold_419_curated_22
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17601..18089)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C5R3_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ98570.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_419_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18169..19515
DNA (1347bp) protein (449aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=AROA_PARL1
scnpilot_solids2_trim150_scaffold_419_curated_24
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19613..19924
DNA (312bp) protein (104aa)
Endonuclease n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2KIV7_9BURK
excinuclease ABCsubunit C domain-containing protein; K07461 putative endonuclease
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
scnpilot_solids2_trim150_scaffold_419_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20009..20683
DNA (675bp) protein (225aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Cytidylate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPE0_PARL1
scnpilot_solids2_trim150_scaffold_419_curated_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20822..22561
DNA (1740bp) protein (580aa)
30S ribosomal protein S1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPD9_PARL1
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_419_curated_27
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22781..24475
DNA (1695bp) protein (565aa)
multi-sensor signal transduction histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Histidine kinase n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PKA2_9CAUL
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
scnpilot_solids2_trim150_scaffold_419_curated_28
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24591..24968
DNA (378bp) protein (126aa)
isomerase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003601376
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESS38111.1}; TaxID=1396830 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia KC-01.;"
scnpilot_solids2_trim150_scaffold_419_curated_29
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25086..25907
DNA (822bp) protein (274aa)
Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NMG2_RHILT
Putative transcriptional regulator {ECO:0000313|EMBL:EJB08022.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
XRE family transcriptional regulator
scnpilot_solids2_trim150_scaffold_419_curated_30
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25914..27767)
DNA (1854bp) protein (618aa)
CLC-type chloride channel protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZC12_AZOL4
Chloride channel protein {ECO:0000313|EMBL:EWY38746.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
CLC-type chloride channel protein; K03281 chloride channel protein, CIC family
Displaying items 1-30 of 44 in total

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