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scnpilot_solids2_trim150_scaffold_2142_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2142_curated_1
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..918
DNA (918bp) protein (306aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Shikimate dehydrogenase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SGD7_PHAFV
aroE; shikimate 5-dehydrogenase
scnpilot_solids2_trim150_scaffold_2142_curated_2
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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954..1565
DNA (612bp) protein (204aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBF8_PHEZH
scnpilot_solids2_trim150_scaffold_2142_curated_3
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1562..2254
DNA (693bp) protein (231aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III, epsilon subunit n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WVZ6_RHOS5
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_solids2_trim150_scaffold_2142_curated_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2306..2824)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D97C6C
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
protein-export protein SecB; K03071 preprotein translocase subunit SecB
scnpilot_solids2_trim150_scaffold_2142_curated_5

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3061..3735
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036CA65E
Uncharacterized protein {ECO:0000313|EMBL:KKN73641.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Import inner membrane translocase subunit Tim44
scnpilot_solids2_trim150_scaffold_2142_curated_6
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3754..5007
DNA (1254bp) protein (418aa)
mltA; membrane-bound lytic murein transglycosylase A (EC:3.2.1.-); K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
Membrane-bound lytic murein transglycosylase A {ECO:0000313|EMBL:ACJ00371.1}; EC=3.2.1.- {ECO:0000313|EMBL:ACJ00371.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Membrane-bound lytic murein transglycosylase A n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVP7_RHOCS
scnpilot_solids2_trim150_scaffold_2142_curated_7
Oceaniovalibus guishaninsula, Oceaniovalibus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5004..5528
DNA (525bp) protein (175aa)
Smr domain protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2GPW6_9RHOB
Smr domain protein {ECO:0000313|EMBL:EKE44681.1}; TaxID=1231392 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceaniovalibus.;" source="Oceaniovalibus guishaninsula JLT2003.;"
Smr protein/MutS2
scnpilot_solids2_trim150_scaffold_2142_curated_8
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5525..5944
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LB44_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJR65169.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2142_curated_9
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5950..6462)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003695B66
ribokinase-like domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
scnpilot_solids2_trim150_scaffold_2142_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6901..7617)
DNA (717bp) protein (239aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Endonuclease III n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ33_PARL1
scnpilot_solids2_trim150_scaffold_2142_curated_11
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7762..8091
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0IX60_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:KJV09682.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2142_curated_12
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8220..8723
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG26_AZOBR
Membrane protein {ECO:0000313|EMBL:EWY40511.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2142_curated_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8803..9699
DNA (897bp) protein (299aa)
AraC family transcriptional regulator (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AKB9_MARMM
6-O-methylguanine DNA methyltransferase {ECO:0000313|EMBL:KFG67375.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_2142_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9663..10469)
DNA (807bp) protein (269aa)
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000255|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000255|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000255|HAMAP-Rule:MF_00102};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=DAPB_PARL1
scnpilot_solids2_trim150_scaffold_2142_curated_15
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10526..11569)
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AKB4_MARMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI67279.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
scnpilot_solids2_trim150_scaffold_2142_curated_16
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11666..12208)
DNA (543bp) protein (181aa)
Protein GrpE n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCH2_METS4
ribulose-phosphate 3-epimerase; K03687 molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_2142_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12230..13306)
DNA (1077bp) protein (359aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ44_PARL1
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_2142_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13418..14131
DNA (714bp) protein (238aa)
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_00564}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Ribonuclease PH n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RNPH_PARL1
scnpilot_solids2_trim150_scaffold_2142_curated_19
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14128..14727
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae;
rdgB; non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z835_9PROT
scnpilot_solids2_trim150_scaffold_2142_curated_20
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14890..16041
DNA (1152bp) protein (384aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
coproporphyrinogen III oxidase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034C292A
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EIZ85088.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
scnpilot_solids2_trim150_scaffold_2142_curated_21
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16048..16455)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372B9DA
glutathione-dependent formaldehyde-activating GFA
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids2_trim150_scaffold_2142_curated_22
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16469..17428)
DNA (960bp) protein (320aa)
Putative branched-chain amino acid ABC transporter, periplasmic component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGF3_AZOBR
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDO59818.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
putative branched-chain amino acid ABC transporter, periplasmic component
Displaying 22 items

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