ggKbase home page

scnpilot_solids2_trim150_scaffold_579_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_579_curated_1
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3..974)
DNA (972bp) protein (324aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
PfkB domain protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J7U7_CYCMS
PfkB domain protein {ECO:0000313|EMBL:AEL27795.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids2_trim150_scaffold_579_curated_2
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1167..1826
DNA (660bp) protein (220aa)
2-dehydro-3-deoxyphosphogluconate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
KDPG and KHG aldolase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1XZQ9_9SPHI
KDPG and KHG aldolase {ECO:0000313|EMBL:EHQ27751.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_solids2_trim150_scaffold_579_curated_3
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1848..3146
DNA (1299bp) protein (433aa)
Major facilitator superfamily MFS_1 n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EFS8_RUNSL
major facilitator superfamily protein; K08191 MFS transporter, ACS family, hexuronate transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEI48698.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_579_curated_4
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3320..4726
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035FCAE1
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_solids2_trim150_scaffold_579_curated_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4740..5198)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382C1B7
RES domain-containing protein
RES domain protein {ECO:0000313|EMBL:ACT94193.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_579_curated_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5216..5743)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036E2637
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94192.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_579_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6043..8487
DNA (2445bp) protein (815aa)
Aspartate kinase {ECO:0000313|EMBL:AEV96515.1}; EC=2.7.2.4 {ECO:0000313|EMBL:AEV96515.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
aspartate kinase; K12524 bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
Aspartate kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK81_NIAKG
scnpilot_solids2_trim150_scaffold_579_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8498..9421
DNA (924bp) protein (308aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39]
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Homoserine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK82_NIAKG
scnpilot_solids2_trim150_scaffold_579_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9454..10752
DNA (1299bp) protein (433aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase {ECO:0000313|EMBL:AEV96517.1}; EC=4.2.3.1 {ECO:0000313|EMBL:AEV96517.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Threonine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK83_NIAKG
scnpilot_solids2_trim150_scaffold_579_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10885..11427
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF65_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91098.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_11
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11829..15188
DNA (3360bp) protein (1120aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037CBEF8
PKD domain-containing protein
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids2_trim150_scaffold_579_curated_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15300..16253)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036C4FA6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01933.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_579_curated_13
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16342..17217)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C1G2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM83883.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17651..18688
DNA (1038bp) protein (346aa)
membrane protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B54A8E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59179.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_579_curated_15
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18678..19475
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CQB8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL76081.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_16
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19515..20753
DNA (1239bp) protein (413aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y4X7_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28305.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_17
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20734..21711
DNA (978bp) protein (326aa)
magnesium chelatase n=1 Tax=Pedobacter agri RepID=UPI00029AD140
Magnesium chelatase {ECO:0000313|EMBL:KIA93161.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
ATPase family associated with various cellular activities (AAA)
scnpilot_solids2_trim150_scaffold_579_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21749..23086
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEF2_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98362.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_579_curated_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23105..23827
DNA (723bp) protein (241aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
tRNA pseudouridine synthase B n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUC9_CHIPD
scnpilot_solids2_trim150_scaffold_579_curated_20
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(23893..24873)
DNA (981bp) protein (327aa)
AraC family transcriptional regulator n=1 Tax=Pontibacter roseus RepID=UPI0003645BE2
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Tax=GWC2_Ignavibacteria_rel_36_12_curated
scnpilot_solids2_trim150_scaffold_579_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25051..25602
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQC5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02139.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_579_curated_22
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

25571..25993
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EG50_9SPHI
glyoxalase/bleomycin resistance protein/dioxygenase; K04750 PhnB protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_solids2_trim150_scaffold_579_curated_23
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26008..26415
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EKC1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KEQ28123.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_24
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26418..26627
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C430A
Uncharacterized protein {ECO:0000313|EMBL:KIA94475.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_25
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26787..27209
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VVM6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK37801.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_579_curated_26
R_OD1_Magasanikbacteria_47_14, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

27555..28445
DNA (891bp) protein (297aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Paenibacillus fonticola RepID=UPI0003714971
3-demethylubiquinone-9 3-methyltransferase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_47_14_curated
scnpilot_solids2_trim150_scaffold_579_curated_27
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28721..29746
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003710792
YdjC family protein
YdjC family protein {ECO:0000313|EMBL:AFK05279.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
scnpilot_solids2_trim150_scaffold_579_curated_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29997..31013
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366B304
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96527.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_579_curated_29
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

31395..32519
DNA (1125bp) protein (375aa)
tail protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI000311F9A5
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
Displaying 29 items

View Taxonomy