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scnpilot_solids2_trim150_scaffold_73_curated

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Displaying items 1-30 of 163 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_73_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..873
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345E603
ABC transporter permease {ECO:0000313|EMBL:KIZ39143.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
glycerol-3-phosphate transport system permease; K05814 sn-glycerol 3-phosphate transport system permease protein
scnpilot_solids2_trim150_scaffold_73_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

884..1696
DNA (813bp) protein (271aa)
ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349FB1D
ABC transporter permease {ECO:0000313|EMBL:KIZ39141.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
sugar ABC transporter permease; K05815 sn-glycerol 3-phosphate transport system permease protein
scnpilot_solids2_trim150_scaffold_73_curated_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1764..2675)
DNA (912bp) protein (304aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhizobium sp. CF080 RepID=J2RIN2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB99907.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
alpha/beta fold family hydrolase
scnpilot_solids2_trim150_scaffold_73_curated_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2689..3591)
DNA (903bp) protein (301aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhizobium sp. CF080 RepID=J2IVA1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB99906.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
alpha/beta hydrolase fold protein
scnpilot_solids2_trim150_scaffold_73_curated_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3759..4619)
DNA (861bp) protein (287aa)
Putative xylanase/chitin deacetylase n=1 Tax=Rhizobium sp. CF080 RepID=J3BJC1_9RHIZ
Polysaccharide deacetylase {ECO:0000313|EMBL:EUB99908.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
polysaccharide deacetylase family protein
scnpilot_solids2_trim150_scaffold_73_curated_6
Halomonas sp. R57-5, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4999..5724
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FCD275
Putative ribulose-5-phosphate 4-epimerase and related epimerases {ECO:0000313|EMBL:CEP34071.1}; TaxID=1610576 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. R57-5.;"
putative ribulose-5-phosphate 4-epimerase-like epimerase
scnpilot_solids2_trim150_scaffold_73_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5879..6658)
DNA (780bp) protein (260aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EUB99920.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EUB99920.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CJ31_9RHIZ
scnpilot_solids2_trim150_scaffold_73_curated_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6792..7298)
DNA (507bp) protein (169aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JXK6_9RHIZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EUB99919.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
marR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_73_curated_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7399..7914)
DNA (516bp) protein (172aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Rhizobium sp. CF080 RepID=J2KHL9_9RHIZ
Flavin reductase domain protein FMN-binding protein {ECO:0000313|EMBL:EUB99921.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
flavin reductase domain-containing protein
scnpilot_solids2_trim150_scaffold_73_curated_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8334..9089
DNA (756bp) protein (252aa)
Taurine-transporting ATPase {ECO:0000313|EMBL:EUB99918.1}; EC=3.6.3.36 {ECO:0000313|EMBL:EUB99918.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J3CJA5_9RHIZ
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_73_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9134..10141
DNA (1008bp) protein (336aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J2T3L4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB99917.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_73_curated_12
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10229..11065
DNA (837bp) protein (279aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J2KHM1_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUB99916.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_73_curated_13
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11058..11879
DNA (822bp) protein (274aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J3CJ33_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUB99915.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
binding-protein-dependent transport system inner membrane protein
scnpilot_solids2_trim150_scaffold_73_curated_14
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11884..12942
DNA (1059bp) protein (353aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=Rhizobium sp. CF080 RepID=J3BWE1_9RHIZ
scnpilot_solids2_trim150_scaffold_73_curated_15
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12939..14420
DNA (1482bp) protein (494aa)
Amidohydrolase (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2TEI4_9RHIZ
Amidohydrolase {ECO:0000313|EMBL:EUB99913.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
peptidase dimerization domain-containing protein; K12941 aminobenzoyl-glutamate utilization protein B
scnpilot_solids2_trim150_scaffold_73_curated_16
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14459..15322
DNA (864bp) protein (288aa)
urate catabolism protein (EC:3.5.1.41)
Putative xylanase/chitin deacetylase (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2RIN0_9RHIZ
Polysaccharide deacetylase {ECO:0000313|EMBL:EUB99912.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
scnpilot_solids2_trim150_scaffold_73_curated_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15453..16556
DNA (1104bp) protein (368aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Rhizobium sp. CF080 RepID=J2IV97_9RHIZ
Luciferase family protein {ECO:0000313|EMBL:EUB99911.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
alkanesulfonate monooxygenase
scnpilot_solids2_trim150_scaffold_73_curated_18
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16731..17639)
DNA (909bp) protein (303aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. CF080 RepID=J3BKM9_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EUB99910.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
AraC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_73_curated_19
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17921..19126
DNA (1206bp) protein (402aa)
Transcriptional regulator, LysR family protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXY0_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIB15697.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
transcriptional regulator, LysR family protein
scnpilot_solids2_trim150_scaffold_73_curated_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19328..20287
DNA (960bp) protein (320aa)
metapyrocatechase; catechol 2,3-dioxygenase; K00446 catechol 2,3-dioxygenase [EC:1.13.11.2]
Putative ring-cleavage extradiol dioxygenase n=1 Tax=Rhizobium sp. CF142 RepID=J1SQT4_9RHIZ
Putative ring-cleavage extradiol dioxygenase {ECO:0000313|EMBL:EJJ27583.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
scnpilot_solids2_trim150_scaffold_73_curated_21
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20298..21026
DNA (729bp) protein (243aa)
Putative LmbE-like protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L3I4_9RHIZ
hypothetical protein
Putative LmbE-like protein {ECO:0000313|EMBL:EJJ27584.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
scnpilot_solids2_trim150_scaffold_73_curated_22
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21026..21700
DNA (675bp) protein (225aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase n=1 Tax=Rhizobium sp. CF080 RepID=J2QRK2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETX14272.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
scnpilot_solids2_trim150_scaffold_73_curated_23
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21733..22812
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3B1Z4_9RHIZ
PrpF protein {ECO:0000313|EMBL:EUC01204.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
FldA protein; K09788 hypothetical protein
scnpilot_solids2_trim150_scaffold_73_curated_24
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22818..23696
DNA (879bp) protein (293aa)
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhizobium sp. CF142 RepID=J2L289_9RHIZ
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EJJ27587.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
phosphogluconate dehydrogenase, NAD-binding-like protein
scnpilot_solids2_trim150_scaffold_73_curated_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23956..24888
DNA (933bp) protein (311aa)
5,10-methylenetetrahydrofolate reductase n=1 Tax=Rhizobium sp. CF080 RepID=J2QRJ8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC01208.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_73_curated_26
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25042..26058
DNA (1017bp) protein (339aa)
Rhamnose ABC transporter, rhamnose-binding protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DRL1_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJB97580.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
rhamnose ABC transporter, periplasmic rhamnose-binding protein; K10559 rhamnose transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_73_curated_27
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26289..27791
DNA (1503bp) protein (501aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ABC transporter permease; K10562 rhamnose transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036317B1
scnpilot_solids2_trim150_scaffold_73_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27788..28780
DNA (993bp) protein (331aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTY9_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EHK55876.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
rhamnose ABC transporter membrane protein
scnpilot_solids2_trim150_scaffold_73_curated_29
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28777..29820
DNA (1044bp) protein (348aa)
ABC transporter membrane spanning protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2Z1_AGRVS
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KJB97583.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ABC transporter permease; K10561 rhamnose transport system permease protein
scnpilot_solids2_trim150_scaffold_73_curated_30
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29932..31188
DNA (1257bp) protein (419aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EJ11_BRASB
branched-chain amino acid ABC transporter substrate-binding protein
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABQ36155.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying items 1-30 of 163 in total

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