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scnpilot_solids2_trim150_scaffold_1_curated

Search features with annotation key words

Displaying items 241-270 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1_curated_241
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245128..246627)
DNA (1500bp) protein (500aa)
succinate-semialdehyde dehydrogenase; K15786 aspartate-semialdehyde dehydrogenase [EC:1.2.1.-]
Succinate-semialdehyde dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7Y9_PELHB
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AEQ50284.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids2_trim150_scaffold_1_curated_242
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(246775..247392)
DNA (618bp) protein (206aa)
Leucine-responsive regulatory protein, regulator for leucine (Or lrp) regulon and high-affinity branched-chain amino acid transport system n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7Y5_PELHB
leucine-responsive regulatory protein; K15782 Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
Leucine-responsive regulatory protein, regulator for leucine (Or lrp) regulon and high-affinity branched-chain amino acid transport system {ECO:0000313|EMBL:AEQ50280.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids2_trim150_scaffold_1_curated_243
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(247429..248202)
DNA (774bp) protein (258aa)
Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA 1 n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SR38_RHIET
ehuA-1; ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA 1
Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA 1 {ECO:0000313|EMBL:AGS24497.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
scnpilot_solids2_trim150_scaffold_1_curated_244
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248199..248894)
DNA (696bp) protein (232aa)
Probable amino-acid ABC transporter permease protein y4tG n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Y4TG_RHISN
Amino acid ABC transporter permease {ECO:0000313|EMBL:KDB01639.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1_curated_245
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248898..249569)
DNA (672bp) protein (224aa)
Amino-acid ABC transporter permease y4tF n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW63_PUSST
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
Amino-acid ABC transporter permease y4tF {ECO:0000313|EMBL:AEC20077.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids2_trim150_scaffold_1_curated_246
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249739..250638)
DNA (900bp) protein (300aa)
Probable amino-acid ABC transporter periplasmic-binding protein y4tE n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Y4TE_RHISN
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDB01637.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
amino acid ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_1_curated_247
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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250995..251969
DNA (975bp) protein (325aa)
Threonine dehydratase {ECO:0000313|EMBL:EJT02117.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EJT02117.1};; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
eutB; threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4T6K1_9RHIZ
scnpilot_solids2_trim150_scaffold_1_curated_248
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

251980..252972
DNA (993bp) protein (331aa)
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ectoine utilization protein EutC n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTU0_9RHIZ
Ectoine utilization protein EutC {ECO:0000313|EMBL:EHK55827.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_1_curated_249
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252994..254178
DNA (1185bp) protein (395aa)
X-Pro dipeptidase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E92D4A
X-Pro dipeptidase {ECO:0000313|EMBL:KGM34156.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ectoine utilization protein EutD; K15783 ectoine hydrolase
scnpilot_solids2_trim150_scaffold_1_curated_250
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254369..255541
DNA (1173bp) protein (391aa)
acetylornithine deacetylase; K01438 acetylornithine deacetylase [EC:3.5.1.16]
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Acetylornithine deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X7_PELHB
scnpilot_solids2_trim150_scaffold_1_curated_251
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255818..256504
DNA (687bp) protein (229aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
UPI0003CE951F related cluster n=1 Tax=unknown RepID=UPI0003CE951F
scnpilot_solids2_trim150_scaffold_1_curated_252
unknown

Not on your lists

comp(256508..256816)
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1_curated_253
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256897..258714)
DNA (1818bp) protein (606aa)
phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12]
phosphogluconate dehydratase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D565C
Phosphogluconate dehydratase {ECO:0000313|EMBL:EXL03200.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
scnpilot_solids2_trim150_scaffold_1_curated_254
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(258773..259489)
DNA (717bp) protein (239aa)
6-phosphogluconolactonase; K01057 6-phosphogluconolactonase [EC:3.1.1.31]
UPI0003CEBA48 related cluster n=1 Tax=unknown RepID=UPI0003CEBA48
6-phosphogluconolactonase {ECO:0000313|EMBL:ESW84102.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
scnpilot_solids2_trim150_scaffold_1_curated_255
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(259489..259719)
DNA (231bp) protein (77aa)
molybdopterin oxidoreductase; K00372 nitrate reductase catalytic subunit [EC:1.7.99.4]
UPI0003CFFF68 related cluster n=1 Tax=unknown RepID=UPI0003CFFF68
Uncharacterized protein {ECO:0000313|EMBL:ESZ77428.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
scnpilot_solids2_trim150_scaffold_1_curated_256
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(259731..261203)
DNA (1473bp) protein (491aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXT4_9RHIZ
scnpilot_solids2_trim150_scaffold_1_curated_257
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261407..262882
DNA (1476bp) protein (492aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2P0N7_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EKF40911.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
scnpilot_solids2_trim150_scaffold_1_curated_258
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262927..263223
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000366E906
DNA polymerase, beta-like region; K07075
DNA polymerase, beta-like region {ECO:0000313|EMBL:ABD05085.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
scnpilot_solids2_trim150_scaffold_1_curated_259
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

263213..263557
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07UM5_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ04359.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_1_curated_260
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

263562..264311
DNA (750bp) protein (250aa)
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:KFB11123.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KFB11123.1};; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C844_9RHIZ
scnpilot_solids2_trim150_scaffold_1_curated_261
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(264323..265087)
DNA (765bp) protein (255aa)
Amino acid ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDY2_9RHIZ
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESX68840.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ABC transporter
scnpilot_solids2_trim150_scaffold_1_curated_262
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265084..265767)
DNA (684bp) protein (228aa)
UPI0003CE88B0 related cluster n=1 Tax=unknown RepID=UPI0003CE88B0
Putative transporter subunit: permease component of ABC superfamily transporter {ECO:0000313|EMBL:CCV04850.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
scnpilot_solids2_trim150_scaffold_1_curated_263
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265862..266632)
DNA (771bp) protein (257aa)
UPI0003CF8A58 related cluster n=1 Tax=unknown RepID=UPI0003CF8A58
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW67861.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
periplasmic component of amino acid ABC-type transporter/signal transduction system
scnpilot_solids2_trim150_scaffold_1_curated_264
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(266786..268072)
DNA (1287bp) protein (429aa)
FAD dependent oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-]
Oxidoreductase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YBA6_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:EHH10987.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
scnpilot_solids2_trim150_scaffold_1_curated_265
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(268199..269632)
DNA (1434bp) protein (478aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
glutamine synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F3C57
Glutamine synthetase {ECO:0000313|EMBL:EHK54417.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_1_curated_266
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(269715..270176)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364A83D
Two-component system, regulatory protein {ECO:0000313|EMBL:CDX43160.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
two-component system, regulatory protein
scnpilot_solids2_trim150_scaffold_1_curated_267
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(270346..270624)
DNA (279bp) protein (93aa)
Uncharacterized protein n=5 Tax=Mesorhizobium RepID=V7EY58_9RHIZ
Strain MEJ076 contig_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIP99747.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_268
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(270694..272007)
DNA (1314bp) protein (438aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1]
Isocitrate lyase {ECO:0000313|EMBL:ETA71228.1}; EC=4.1.3.1 {ECO:0000313|EMBL:ETA71228.1};; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
Isocitrate lyase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q988Z4_RHILO
scnpilot_solids2_trim150_scaffold_1_curated_269
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

272255..273697
DNA (1443bp) protein (481aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXU5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54421.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K07110
scnpilot_solids2_trim150_scaffold_1_curated_270
unknown

Not on your lists

comp(273985..274182)
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying items 241-270 of 463 in total

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