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scnpilot_solids2_trim150_scaffold_1_curated

Search features with annotation key words

Displaying items 1-30 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1_curated_1
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(943..3390)
DNA (2448bp) protein (816aa)
Putative virulence-associated protein E n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF79_9RHIZ
Putative virulence-associated protein E {ECO:0000313|EMBL:EGL63639.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3407..3715)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF80_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDR88664.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
scnpilot_solids2_trim150_scaffold_1_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3881..4351
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF81_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDR88665.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
scnpilot_solids2_trim150_scaffold_1_curated_4
unknown

Not on your lists

4506..4835
DNA (330bp) protein (110aa)
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_5
unknown

Not on your lists

4835..5038
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5035..6261
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF83_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDR88667.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_7
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6303..6968
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL63644.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
scnpilot_solids2_trim150_scaffold_1_curated_8
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7033..7875
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF48_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL63608.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
ParB-like partition protein
scnpilot_solids2_trim150_scaffold_1_curated_9

Not on your lists

7877..8503
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Vibrio phage jenny 12G5 RepID=R9UB09_9VIRU
Uncharacterized protein {ECO:0000313|EMBL:KKN29804.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_10
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8500..9096
DNA (597bp) protein (199aa)
Endodeoxyribonuclease n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF86_9RHIZ
Endodeoxyribonuclease {ECO:0000313|EMBL:EGL63646.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
putative exonuclease
scnpilot_solids2_trim150_scaffold_1_curated_11
Paracoccus phage vB_PmaS_IMEP1, Caudovirales, Viruses

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9108..9785
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Commensalibacter intestini A911 RepID=G6F2B5_9PROT
CzcR-like response regulator {ECO:0000313|EMBL:AJD83149.1}; TaxID=1561065 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Paracoccus phage vB_PmaS_IMEP1.;"
CzcR-like response regulator
scnpilot_solids2_trim150_scaffold_1_curated_12
unknown

Not on your lists

9782..10012
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10009..11136
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JER3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDR88276.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
DNA-directed DNA polymerase B
scnpilot_solids2_trim150_scaffold_1_curated_14
Bacillus hemicellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11129..11794
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Staphylococcus epidermidis NIHLM061 RepID=J0EQW1_STAEP
Uncharacterized protein {ECO:0000313|EMBL:GAE32435.1}; TaxID=1236971 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus hemicellulosilyticus JCM 9152.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_15
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11784..12743
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JER3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL63561.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
DNA-directed DNA polymerase B
scnpilot_solids2_trim150_scaffold_1_curated_16
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12740..13048
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JER2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL63560.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
VRR-NUC domain-containing protein
scnpilot_solids2_trim150_scaffold_1_curated_17
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13304..14719
DNA (1416bp) protein (472aa)
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JF87_9RHIZ
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000313|EMBL:EGL63647.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
SNF2-like protein
scnpilot_solids2_trim150_scaffold_1_curated_18
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14789..15460
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PE69_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ85449.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1_curated_19
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15976..17733)
DNA (1758bp) protein (586aa)
Cytochrome P450 n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4SLK5_AMYOR
Cytochrome P450 {ECO:0000313|EMBL:AIG78881.1}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
cytochrome P450
scnpilot_solids2_trim150_scaffold_1_curated_20
unknown

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17998..18843
DNA (846bp) protein (282aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1_curated_21
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19157..19315
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THF6_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESZ27642.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
scnpilot_solids2_trim150_scaffold_1_curated_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19344..20759
DNA (1416bp) protein (472aa)
Amidase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123N9_POLSJ
amidase
Amidase {ECO:0000313|EMBL:ABE46253.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
scnpilot_solids2_trim150_scaffold_1_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20977..21756)
DNA (780bp) protein (260aa)
ABC transporter related protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXW8_FERPA
Uncharacterized protein {ECO:0000313|EMBL:KGM31417.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1_curated_24
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21764..22504)
DNA (741bp) protein (247aa)
amino acid ABC transporter ATP-binding protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626AD1
Uncharacterized protein {ECO:0000313|EMBL:KGM30008.1}; Flags: Fragment;; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1_curated_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22494..23474)
DNA (981bp) protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM35688.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Inner-membrane translocator id=1879040 bin=GWD2_Chloroflexi_49_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
inner-membrane translocator
scnpilot_solids2_trim150_scaffold_1_curated_26
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23486..24385)
DNA (900bp) protein (300aa)
Putative branched-chain amino acid transport permease n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FY62_9RHIZ
Branched-chain amino acid transport permease {ECO:0000313|EMBL:KGM35687.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
branched-chain amino acid transport permease; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1_curated_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24485..25708)
DNA (1224bp) protein (408aa)
ABC transporter substrate-binding protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FY58_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM35686.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
receptor family ligand binding region family protein 11
scnpilot_solids2_trim150_scaffold_1_curated_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25817..26680
DNA (864bp) protein (288aa)
Transcriptional regulator, RpiR family n=3 Tax=Rhizobium meliloti RepID=F6C1T9_SINMB
Uncharacterized protein {ECO:0000313|EMBL:KGM35685.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
RpiR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1_curated_29
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26693..28021
DNA (1329bp) protein (443aa)
Class-III pyridoxal-phosphate-dependent aminotransferase (EC:2.6.-.-)
Class-III pyridoxal-phosphate-dependent aminotransferase n=2 Tax=Rhizobium meliloti RepID=M4MIX5_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KGM35684.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids2_trim150_scaffold_1_curated_30
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28326..28769
DNA (444bp) protein (148aa)
GreA/GreB family elongation factor n=1 Tax=Rhizobium sp. RepID=L0NF21_RHISP
GreA/GreB family elongation factor {ECO:0000313|EMBL:CCF18922.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
nucleoside diphosphate kinase regulator; K06140 regulator of nucleoside diphosphate kinase
Displaying items 1-30 of 463 in total

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