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scnpilot_solids2_trim150_scaffold_48_curated

Search features with annotation key words

Displaying items 1-30 of 176 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_48_curated_1
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..88
DNA (87bp) protein (29aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037E1DA8
Uncharacterized protein {ECO:0000313|EMBL:EAS48834.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_2
unknown

Not on your lists

315..1106
DNA (792bp) protein (264aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_48_curated_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1162..1905)
DNA (744bp) protein (248aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
short-chain dehydrogenase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003720644
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACT94255.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_48_curated_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2132..2392)
DNA (261bp) protein (87aa)
UPI0003CFEF14 related cluster n=1 Tax=unknown RepID=UPI0003CFEF14
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
cell division topological specificity factor MinE; K03608 cell division topological specificity factor
scnpilot_solids2_trim150_scaffold_48_curated_5
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2389..3204)
DNA (816bp) protein (272aa)
UPI0003D02BC4 related cluster n=1 Tax=unknown RepID=UPI0003D02BC4
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
cell division inhibitor MinD; K03609 septum site-determining protein MinD
scnpilot_solids2_trim150_scaffold_48_curated_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3255..4010)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D4F3F8
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
septum site-determining protein MinC; K03610 septum site-determining protein MinC
scnpilot_solids2_trim150_scaffold_48_curated_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4334..5284
DNA (951bp) protein (317aa)
Sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGZ7_9RHIZ
Sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein {ECO:0000313|EMBL:CCV03854.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
sugar ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_48_curated_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5388..6929
DNA (1542bp) protein (514aa)
ABC transporter, ATP-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZVL4_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHM02977.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative sugar (D-ribose) ABC transporter
scnpilot_solids2_trim150_scaffold_48_curated_9
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6940..7944
DNA (1005bp) protein (335aa)
UPI0003CE773D related cluster n=1 Tax=unknown RepID=UPI0003CE773D
Sugar ABC transporter permease {ECO:0000313|EMBL:KDR38572.1}; Xylose ABC transporter, permease protein XylH {ECO:0000313|EMBL:CDY78850.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
inner-membrane translocator; K10440 ribose transport system permease protein
scnpilot_solids2_trim150_scaffold_48_curated_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7974..8756
DNA (783bp) protein (261aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUW3_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EIM27755.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_48_curated_11
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8877..9809)
DNA (933bp) protein (311aa)
galactose 1-dehydrogenase; K00035 D-galactose 1-dehydrogenase [EC:1.1.1.48]
Galactose 1-dehydrogenase n=2 Tax=Labrenzia RepID=U7GGF5_9RHOB
Galactose 1-dehydrogenase {ECO:0000313|EMBL:ERP95756.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
scnpilot_solids2_trim150_scaffold_48_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9916..10905)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLM4_9RHIZ
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:CDX50977.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11130..12422
DNA (1293bp) protein (431aa)
Monooxygenase FAD-binding protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWU1_POLGS
Monooxygenase FAD-binding protein
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:ADZ71518.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_14
unknown

Not on your lists

12447..12560
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_48_curated_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12577..13128)
DNA (552bp) protein (184aa)
Tautomerase, putative n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K8_POLGS
Tautomerase
Tautomerase, putative {ECO:0000313|EMBL:ADZ72260.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13217..14137
DNA (921bp) protein (307aa)
Regulatory protein GntR, HTH:UbiC transcription regulator-associated n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K7_POLGS
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
Regulatory protein GntR, HTH:UbiC transcription regulator-associated {ECO:0000313|EMBL:ADZ72259.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_17
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14140..15387
DNA (1248bp) protein (416aa)
ABC transporter, substrate-binding protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K6_POLGS
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:ADZ72258.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_18
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15454..16326
DNA (873bp) protein (291aa)
Putative Branched-chain amino acid ABC transporter (Permease protein) livH-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K5_POLGS
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Putative Branched-chain amino acid ABC transporter (Permease protein) livH-like protein {ECO:0000313|EMBL:ADZ72257.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_19
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16332..17318
DNA (987bp) protein (329aa)
Putative branched-chain amino acid ABC transporter (Permease protein) livM-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K4_POLGS
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
Putative branched-chain amino acid ABC transporter (Permease protein) livM-like protein {ECO:0000313|EMBL:ADZ72256.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_20
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17311..18057
DNA (747bp) protein (249aa)
ABC-type transporter, ATPase component: HAAT family n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K3_POLGS
ABC transporter ATPase; K01995 branched-chain amino acid transport system ATP-binding protein
ABC-type transporter, ATPase component: HAAT family {ECO:0000313|EMBL:ADZ72255.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_21
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18050..18754
DNA (705bp) protein (235aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K2_POLGS
branched-chain amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:ADZ72254.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18751..20031
DNA (1281bp) protein (427aa)
3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase, large subunit n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K1_POLGS
3-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:ADZ72253.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_23
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20028..20525
DNA (498bp) protein (166aa)
leuD; 3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4K0_POLGS
scnpilot_solids2_trim150_scaffold_48_curated_24
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20528..21394
DNA (867bp) protein (289aa)
Isocitrate lyase family protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4J9_POLGS
Isocitrate lyase
Isocitrate lyase family protein {ECO:0000313|EMBL:ADZ72250.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_25
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21394..23130
DNA (1737bp) protein (579aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4J8_POLGS
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ADZ72251.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_26
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23127..25184
DNA (2058bp) protein (686aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4J7_POLGS
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ADZ72249.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25184..25801
DNA (618bp) protein (206aa)
Isochorismatase family protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4J6_POLGS
isochorismatase
Isochorismatase family protein {ECO:0000313|EMBL:ADZ72248.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_28
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25803..27212
DNA (1410bp) protein (470aa)
fumarate reductase/succinate dehydrogenase flavoprotein-like protein; K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1]
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4J5_POLGS
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein {ECO:0000313|EMBL:ADZ72247.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_48_curated_29
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27402..28469
DNA (1068bp) protein (356aa)
Aliphatic nitrilase n=2 Tax=Oligotropha carboxidovorans RepID=B6JH36_OLICO
aliphatic nitrilase
Nitrilase {ECO:0000313|EMBL:AEI05987.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_48_curated_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28434..29360)
DNA (927bp) protein (309aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035E57B6
LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CAK10673.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
Displaying items 1-30 of 176 in total

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