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scnpilot_solids2_trim150_scaffold_160_curated

Search features with annotation key words

Displaying items 61-90 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_160_curated_61
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65635..66294
DNA (660bp) protein (220aa)
UPI0003CFEE5B related cluster n=1 Tax=unknown RepID=UPI0003CFEE5B
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ25601.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_160_curated_62
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66341..66604
DNA (264bp) protein (88aa)
Transcriptional regulator n=2 Tax=Mesorhizobium RepID=Q98FH7_RHILO
transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:ESY92646.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
scnpilot_solids2_trim150_scaffold_160_curated_63
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66795..66971)
DNA (177bp) protein (59aa)
Uncharacterized protein n=5 Tax=Mesorhizobium RepID=V7ETW9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX14513.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_64
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67189..67392
DNA (204bp) protein (68aa)
UPI0003CFA6CE related cluster n=1 Tax=unknown RepID=UPI0003CFA6CE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZQ17549.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_160_curated_65
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67484..67975
DNA (492bp) protein (164aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor bas
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003455BC4
scnpilot_solids2_trim150_scaffold_160_curated_66
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67972..69054
DNA (1083bp) protein (361aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhiz
Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7A9_MESCW
scnpilot_solids2_trim150_scaffold_160_curated_67
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69184..69309
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=3 Tax=Mesorhizobium RepID=E8T7A7_MESCW
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_160_curated_68
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69380..70015
DNA (636bp) protein (212aa)
UPI0003D06091 related cluster n=1 Tax=unknown RepID=UPI0003D06091
Uncharacterized protein {ECO:0000313|EMBL:ESY90041.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_69
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70062..71498)
DNA (1437bp) protein (479aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MD69_9RHIZ
scnpilot_solids2_trim150_scaffold_160_curated_70
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71495..72055)
DNA (561bp) protein (187aa)
Uncharacterized protein n=13 Tax=Brucella abortus RepID=N6ZJ44_BRUAO
Uncharacterized protein {ECO:0000313|EMBL:EXL10458.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_71
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72231..73040
DNA (810bp) protein (270aa)
N-formylglutamate amidohydrolase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EE0F52
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:CCV04881.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
N-formylglutamate amidohydrolase
scnpilot_solids2_trim150_scaffold_160_curated_72
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73054..73359
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM52_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58244.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K09948 hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_73
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73492..73752
DNA (261bp) protein (87aa)
UPF0335 protein MAXJ12_05983 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM33_9RHIZ
UPF0335 protein MAXJ12_05983 {ECO:0000256|HAMAP-Rule:MF_00797}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_74
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74063..75115)
DNA (1053bp) protein (351aa)
Putative epoxide hydrolase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SA19_9BRAD
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC48473.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
putative epoxide hydrolase precursor
scnpilot_solids2_trim150_scaffold_160_curated_75
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75187..75966)
DNA (780bp) protein (260aa)
Mlr6684 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q988L9_RHILO
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:ETA71330.1}; Flags: Precursor;; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_76
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76095..77390)
DNA (1296bp) protein (432aa)
multidrug MFS transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI0003790B21
epoxide hydrolase domain-containing protein
Epoxide hydrolase domain protein {ECO:0000313|EMBL:ACS56729.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
scnpilot_solids2_trim150_scaffold_160_curated_77
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

77874..80045
DNA (2172bp) protein (724aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITF2_KORVE
PAS/PAC sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_160_curated_78
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80042..80416
DNA (375bp) protein (125aa)
UPI0003D0370C related cluster n=1 Tax=unknown RepID=UPI0003D0370C
Chemotaxis protein CheY {ECO:0000313|EMBL:ESZ13008.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
response regulator receiver protein
scnpilot_solids2_trim150_scaffold_160_curated_79
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80458..81126
DNA (669bp) protein (223aa)
UPI0003CFD111 related cluster n=1 Tax=unknown RepID=UPI0003CFD111
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESZ13007.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
two component LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_160_curated_80
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81195..82373
DNA (1179bp) protein (393aa)
RND efflux membrane fusion protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FM01_9RHIZ
RND efflux membrane fusion protein {ECO:0000313|EMBL:CCV15364.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
RND efflux membrane fusion protein
scnpilot_solids2_trim150_scaffold_160_curated_81
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82374..85550
DNA (3177bp) protein (1059aa)
UPI0003CE7349 related cluster n=1 Tax=unknown RepID=UPI0003CE7349
Transporter {ECO:0000313|EMBL:ESW85214.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
RND multidrug efflux transporter MexF; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
scnpilot_solids2_trim150_scaffold_160_curated_82
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85602..85967)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQA5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61592.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_160_curated_83
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86226..87305)
DNA (1080bp) protein (360aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQA3_NITHX
NADH:flavin oxidoreductase
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:ABE61594.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_160_curated_84
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87482..88402
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) PF6_NITHX">RepID=Q1QPF6_NITHX
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE61891.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_160_curated_85
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88672..89073)
DNA (402bp) protein (134aa)
methionine sulfoxide reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003042B1E
Methionine sulfoxide reductase B {ECO:0000313|EMBL:KKB77168.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
methionine-R-sulfoxide reductase
scnpilot_solids2_trim150_scaffold_160_curated_86
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89193..90623)
DNA (1431bp) protein (477aa)
sodium:proton antiporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C261C
Sodium:proton antiporter {ECO:0000313|EMBL:ESZ27208.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
citrate transporter
scnpilot_solids2_trim150_scaffold_160_curated_87
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90710..91924)
DNA (1215bp) protein (405aa)
VWA containing CoxE family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM06_9RHIZ
VWA containing CoxE family protein {ECO:0000313|EMBL:EHK58198.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K09989 hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_88
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92116..93330
DNA (1215bp) protein (405aa)
ABC transporter substrate binding protein Branched chain amino acid n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2FVW1_9GAMM
Leu/Ile/Val-binding protein family {ECO:0000313|EMBL:KFE34643.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
Leu/Ile/Val-binding protein family
scnpilot_solids2_trim150_scaffold_160_curated_89
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93426..94190
DNA (765bp) protein (255aa)
Putative branched-chain amino acid ABC transporter ATP-binding subunit protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=F7Q914_9GAMM
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDB03444.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
ABC transporter ATP-binding protein
scnpilot_solids2_trim150_scaffold_160_curated_90
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94183..94923
DNA (741bp) protein (247aa)
High-affinity branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Marinobacter sp. BSs20148 RepID=M1F774_9ALTE
Histidinol dehydrogenase {ECO:0000313|EMBL:KDB03445.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF
Displaying items 61-90 of 220 in total

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