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scnpilot_solids2_trim150_scaffold_160_curated

Search features with annotation key words

Displaying items 1-30 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_160_curated_1
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..80
DNA (78bp) protein (26aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQC0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM71772.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_2
unknown

Not on your lists

101..427
DNA (327bp) protein (109aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_160_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(350..1495)
DNA (1146bp) protein (382aa)
Patatin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNP8_9RHIZ
Patatin {ECO:0000313|EMBL:KFL26608.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
patatin/phospholipase-related protein
scnpilot_solids2_trim150_scaffold_160_curated_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1745..3145
DNA (1401bp) protein (467aa)
Polysaccharide biosynthesis protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG4_9RHIZ
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDX13644.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
polysaccharide biosynthesis protein
scnpilot_solids2_trim150_scaffold_160_curated_5
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3142..4269
DNA (1128bp) protein (376aa)
Group 1 glycosyl transferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG5_9RHIZ
Group 1 glycosyl transferase {ECO:0000313|EMBL:CDX13646.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
glycosyl transferase, group 1
scnpilot_solids2_trim150_scaffold_160_curated_6
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4283..5791)
DNA (1509bp) protein (503aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX13647.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5956..7158
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09189.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7209..8426)
DNA (1218bp) protein (406aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX13651.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
monooxygenase, FAD-binding protein
scnpilot_solids2_trim150_scaffold_160_curated_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8423..9208)
DNA (786bp) protein (262aa)
UDP-hexose transferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW45_RHITR
UDP-hexose transferase {ECO:0000313|EMBL:CDX13654.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
UDP-hexose transferase
scnpilot_solids2_trim150_scaffold_160_curated_10
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9560..10504)
DNA (945bp) protein (315aa)
Aldo/keto reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JQ2_MESSB
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABG62373.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_160_curated_11
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(10556..10963)
DNA (408bp) protein (136aa)
hypothetical protein; K01500 [EC:3.5.4.-]
Cytidine deaminase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERK0_BRASB
Tax=RBG_16_Chloroflexi_68_14_curated
scnpilot_solids2_trim150_scaffold_160_curated_12
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11250..12656
DNA (1407bp) protein (469aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FF49_9RHIZ
scnpilot_solids2_trim150_scaffold_160_curated_13
unknown

Not on your lists

comp(12848..13075)
DNA (228bp) protein (76aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_160_curated_14
unknown

Not on your lists

comp(13171..13290)
DNA (120bp) protein (40aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_160_curated_15
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13362..14300)
DNA (939bp) protein (313aa)
Tyrosine recombinase XerC n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAZ7_9RHIZ
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
xerC; site-specific tyrosine recombinase XerC; K03733 integrase/recombinase XerC
scnpilot_solids2_trim150_scaffold_160_curated_16
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14382..14954
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036D4839
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
scnpilot_solids2_trim150_scaffold_160_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14951..15661
DNA (711bp) protein (237aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL77_9RHIZ
tRNA (guanine-N1)-methyltransferase
scnpilot_solids2_trim150_scaffold_160_curated_18
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15681..16418)
DNA (738bp) protein (246aa)
UPI0003CE7A67 related cluster n=1 Tax=unknown RepID=UPI0003CE7A67
putative permease
Membrane protein {ECO:0000313|EMBL:ESY82547.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
scnpilot_solids2_trim150_scaffold_160_curated_19
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16626..17189
DNA (564bp) protein (188aa)
50S ribosomal protein L19 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL78_9RHIZ
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
scnpilot_solids2_trim150_scaffold_160_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17332..17982
DNA (651bp) protein (217aa)
Type 11 methyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL83_9RHIZ
Type 11 methyltransferase {ECO:0000313|EMBL:EHK58567.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18131..18571
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7K4_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM25176.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
scnpilot_solids2_trim150_scaffold_160_curated_22
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18743..18871
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3A3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV10658.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18931..20340
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
isopropylmalate isomerase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
isopropylmalate isomerase n=1 Tax=Rhizobium loti RepID=UPI00036533FF
scnpilot_solids2_trim150_scaffold_160_curated_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20420..22234)
DNA (1815bp) protein (605aa)
ABC transporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLC6_9RHIZ
Holdfast attachment protein C {ECO:0000313|EMBL:CDX49914.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter ATP-binding protein; K15738 ATP-binding cassette, subfamily F, uup
scnpilot_solids2_trim150_scaffold_160_curated_25
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22274..22909)
DNA (636bp) protein (212aa)
thiamine pyrophosphokinase; K00949 thiamine pyrophosphokinase [EC:2.7.6.2]
Thiamine diphosphokinase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CU9_MESSB
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EZQ17554.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_160_curated_26
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23146..24660
DNA (1515bp) protein (505aa)
metalloprotease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FCC960
Metalloprotease {ECO:0000313|EMBL:EZQ17550.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
putative Zn-dependent protease
scnpilot_solids2_trim150_scaffold_160_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24678..25538)
DNA (861bp) protein (287aa)
RNA polymerase sigma factor n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLV5_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor
scnpilot_solids2_trim150_scaffold_160_curated_28
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25833..26405)
DNA (573bp) protein (191aa)
CarD family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4G4_9RHIZ
CarD family transcriptional regulator {ECO:0000313|EMBL:EIM76716.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
CarD-like transcriptional regulator
scnpilot_solids2_trim150_scaffold_160_curated_29

Not on your lists

comp(26755..27093)
DNA (339bp) protein (113aa)
Ferredoxin n=1 Tax=uncultured bacterium HF130_12L15 RepID=E0XPQ0_9BACT
Ferredoxin {ECO:0000313|EMBL:ADI16391.1}; TaxID=710815 species="Bacteria; environmental samples.;" source="uncultured bacterium HF130_12L15.;"
ferredoxin II; K05524 ferredoxin
scnpilot_solids2_trim150_scaffold_160_curated_30
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27206..27580)
DNA (375bp) protein (125aa)
RNA-binding S4 domain-containing protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MDW4_9RHIZ
RNA-binding S4 domain-containing protein {ECO:0000313|EMBL:EKF18965.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
Displaying items 1-30 of 220 in total

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