ggKbase home page

scnpilot_solids2_trim150_scaffold_160_curated

Search features with annotation key words

Displaying items 91-120 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_160_curated_91
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94998..95903
DNA (906bp) protein (302aa)
Putative branched-chain amino acid transport permease protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=F7Q917_9GAMM
ABC transporter permease {ECO:0000313|EMBL:KDB03446.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
braD; high-affinity branched-chain amino acid transport system permease BraD
scnpilot_solids2_trim150_scaffold_160_curated_92
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95903..96871
DNA (969bp) protein (323aa)
High-affinity branched-chain amino acid transport system permease livM n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6WXG3_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KEO60555.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
livM; high-affinity branched-chain amino acid transport system permease livM
scnpilot_solids2_trim150_scaffold_160_curated_93
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96902..97348)
DNA (447bp) protein (149aa)
GCN5 family N-acetyltransferase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHF2_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:CDX45506.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
acetyltransferase
scnpilot_solids2_trim150_scaffold_160_curated_94
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97665..98504)
DNA (840bp) protein (280aa)
ATPase associated with various cellular activities AAA_5 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TM26_MESCW
ATPase AAA
ATPase associated with various cellular activities AAA_5 {ECO:0000313|EMBL:ADV10411.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_160_curated_95
unknown

Not on your lists

comp(98699..98986)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_160_curated_96
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99451..100092
DNA (642bp) protein (214aa)
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FC947B
scnpilot_solids2_trim150_scaffold_160_curated_97
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100161..100985
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C758_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX25259.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
metallophosphoesterase; K09769 hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_98
Brucella abortus, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101156..101911
DNA (756bp) protein (252aa)
membrane protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030CC36C
Integral membrane protein TerC {ECO:0000313|EMBL:EEX62349.1}; TaxID=520454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella abortus bv. 6 str. 870.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_99
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102070..102819
DNA (750bp) protein (250aa)
PREDICTED: probable transcriptional regulatory protein HAH1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C19172
hypothetical protein
Probable transcriptional regulatory protein MESS2_1370074 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
scnpilot_solids2_trim150_scaffold_160_curated_100
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102884..103216)
DNA (333bp) protein (111aa)
Msl1788 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98JT8_RHILO
hypothetical protein
Msl1788 protein {ECO:0000313|EMBL:BAB49077.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids2_trim150_scaffold_160_curated_101
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(103345..103566)
DNA (222bp) protein (74aa)
50S ribosomal protein L31 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MNQ5_9RHIZ
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
scnpilot_solids2_trim150_scaffold_160_curated_102
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103748..105577
DNA (1830bp) protein (610aa)
Lipid A ABC exporter family, fused ATPase and inner membrane subunits n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJA1_9RHIZ
Lipid A ABC exporter family, fused ATPase and inner membrane subunits {ECO:0000313|EMBL:CCV04784.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter ATP-binding protein; K06147 ATP-binding cassette, subfamily B, bacterial
scnpilot_solids2_trim150_scaffold_160_curated_103
Siccibacter turicensis, Siccibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105853..106206
DNA (354bp) protein (118aa)
Mll3930 protein n=1 Tax=Cronobacter turicensis 564 RepID=K8BSY8_9ENTR
Mll3930 protein {ECO:0000313|EMBL:CCJ91497.1}; TaxID=1208590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Siccibacter.;" source="Siccibacter turicensis 564.;"
ypaA; protein YpaA
scnpilot_solids2_trim150_scaffold_160_curated_104
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106191..106553
DNA (363bp) protein (121aa)
UPF0235 protein Rpal_0418 n=2 Tax=Rhodopseudomonas palustris RepID=Y418_RHOPT
hypothetical protein; K09131 hypothetical protein
UPF0235 protein RPA0414 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
scnpilot_solids2_trim150_scaffold_160_curated_105
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106534..107562)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C3810
Uncharacterized protein {ECO:0000313|EMBL:CDX25214.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
flagellar motor protein
scnpilot_solids2_trim150_scaffold_160_curated_106
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107563..108570)
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLI8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58386.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_107
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108705..109454)
DNA (750bp) protein (250aa)
polar amino acid ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Polar amino acid uptake family ABC transporter ATP-binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I2A3_AZOC5
Glutamine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX16721.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
scnpilot_solids2_trim150_scaffold_160_curated_108
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109462..110319)
DNA (858bp) protein (286aa)
Glutamate transport membrane-spanning protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RLL2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX16718.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_160_curated_109
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110316..111065)
DNA (750bp) protein (250aa)
Polar amino acid uptake family ABC transporter, permease protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RSU9_9RHIZ
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:CDX16715.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
polar amino acid ABC transporter inner membrane protein; K02029 polar amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_160_curated_110
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111173..111973)
DNA (801bp) protein (267aa)
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RJD5_9RHIZ
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDX16713.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
family 3 extracellular solute-binding protein
scnpilot_solids2_trim150_scaffold_160_curated_111
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112343..113680
DNA (1338bp) protein (446aa)
Lipoprotein, putative n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KJ89_9RHIZ
Lipoprotein, putative {ECO:0000313|EMBL:EMG55220.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
putative esterase/lipase/thioesterase
scnpilot_solids2_trim150_scaffold_160_curated_112
Brucella melitensis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113698..114501)
DNA (804bp) protein (268aa)
inositol-phosphate phosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol phosphatase/fructose-1,6-bisphosphatase {ECO:0000313|EMBL:EEW86256.1}; Myo-inositol-1(Or 4)-monophosphatase {ECO:0000313|EMBL:AAL51507.1}; EC=3.1.3.25 {ECO:0000313|EMBL:AAL51507.1};; TaxID=224914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094).;"
Inositol monophosphatase family protein n=93 Tax=Brucella RepID=A5VS66_BRUO2
scnpilot_solids2_trim150_scaffold_160_curated_113
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114618..115184)
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LM96_9RHIZ
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
elongation factor P; K02356 elongation factor P
scnpilot_solids2_trim150_scaffold_160_curated_114
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115305..116273)
DNA (969bp) protein (323aa)
Sel1 domain-containing protein repeat-containing protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NS36_9RHIZ
Sel1 domain-containing protein repeat-containing protein {ECO:0000313|EMBL:EKF42110.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Sel1 domain-containing protein repeat-containing protein; K07126
scnpilot_solids2_trim150_scaffold_160_curated_115
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116270..116935)
DNA (666bp) protein (222aa)
Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:ESX72543.1}; EC=2.5.1.3 {ECO:0000313|EMBL:ESX72543.1};; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
UPI0003CEC65E related cluster n=1 Tax=unknown RepID=UPI0003CEC65E
scnpilot_solids2_trim150_scaffold_160_curated_116
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117113..117883
DNA (771bp) protein (257aa)
Putative permease n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HLL2_9RHIZ
Putative permease {ECO:0000313|EMBL:EJM99370.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein; K07090
scnpilot_solids2_trim150_scaffold_160_curated_117
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117977..119620
DNA (1644bp) protein (548aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
UPI0003D02A4B related cluster n=1 Tax=unknown RepID=UPI0003D02A4B
Acyl-CoA synthetase {ECO:0000313|EMBL:ESZ18574.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
scnpilot_solids2_trim150_scaffold_160_curated_118
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119992..120519
DNA (528bp) protein (176aa)
UPI0003CE4792 related cluster n=1 Tax=unknown RepID=UPI0003CE4792
AraC family transcriptional regulator {ECO:0000313|EMBL:ESW81908.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein; K13592 regulator of CtrA degradation
scnpilot_solids2_trim150_scaffold_160_curated_119
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120583..121095
DNA (513bp) protein (171aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3A7_9RHIZ
scnpilot_solids2_trim150_scaffold_160_curated_120
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121167..121418
DNA (252bp) protein (84aa)
Holliday junction resolvase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D144_9RHIZ
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:EDQ34379.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
AbrB family transcriptional regulator
Displaying items 91-120 of 220 in total

View Taxonomy