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scnpilot_solids2_trim150_scaffold_1415_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1415_curated_1
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..558
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D538E9
Putative ABC transport system, integral membrane protein {ECO:0000313|EMBL:CCN22289.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
ABC transporter; K09971 general L-amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1415_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

571..1347
DNA (777bp) protein (259aa)
ABC transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B6479
General L-amino acid transport ATP-binding protein {ECO:0000313|EMBL:KFC69074.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
general L-amino acid transport ATP-binding protein AapP
scnpilot_solids2_trim150_scaffold_1415_curated_3
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..4572)
DNA (3189bp) protein (1063aa)
RND efflux transporter, HAE1 family, translocase subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBI7_HYPSM
HAE1 family RND efflux transporter translocase subunit
RND efflux transporter, HAE1 family, translocase subunit {ECO:0000313|EMBL:CCB63877.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_solids2_trim150_scaffold_1415_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4602..5798)
DNA (1197bp) protein (399aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EKM3_METSB
Secretion protein HlyD {ECO:0000313|EMBL:KFC61615.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RND family efflux transporter MFP subunit
scnpilot_solids2_trim150_scaffold_1415_curated_5
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5986..7470
DNA (1485bp) protein (495aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Methylobacterium extorquens RepID=C5AXE9_METEA
scnpilot_solids2_trim150_scaffold_1415_curated_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7476..7970
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030A1731
Uncharacterized protein {ECO:0000313|EMBL:KFG68742.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
GCN5-like N-acetyltransferase
scnpilot_solids2_trim150_scaffold_1415_curated_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7974..8534)
DNA (561bp) protein (187aa)
Cytochrome O ubiquinol oxidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SED8_9RHIZ
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:AHB48304.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1415_curated_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8634..9107
DNA (474bp) protein (158aa)
acetyltransferase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000374DDF6
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACA18700.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1415_curated_9
unknown

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comp(9112..9444)
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1415_curated_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9635..10333
DNA (699bp) protein (233aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003152849
Glutathione S-transferase {ECO:0000313|EMBL:EIM28475.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_1415_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10345..10722)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ICV3_BEII9
Uncharacterized protein {ECO:0000313|EMBL:KFC61620.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1415_curated_12
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10970..11209
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000362667A
Uncharacterized protein {ECO:0000313|EMBL:ESR23441.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein; K07126
scnpilot_solids2_trim150_scaffold_1415_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11509..12663)
DNA (1155bp) protein (385aa)
Transporter, major facilitator family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A330_9PROT
Arabinose efflux permease family protein {ECO:0000313|EMBL:KFC71643.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator superfamily mfs_1
scnpilot_solids2_trim150_scaffold_1415_curated_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13157..13837
DNA (681bp) protein (227aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2'-5' RNA ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWI1_CAUSK
2'-5' RNA ligase {ECO:0000313|EMBL:ABZ71609.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_solids2_trim150_scaffold_1415_curated_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13850..14212
DNA (363bp) protein (121aa)
ArsC family transcriptional regulator n=1 Tax=Methylopila sp. M107 RepID=UPI0003763836
ArsC family transcriptional regulator {ECO:0000313|EMBL:KDP70657.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1415_curated_16
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14348..15007
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030EA10F
Uncharacterized protein {ECO:0000313|EMBL:EIZ86014.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1415_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15020..16045
DNA (1026bp) protein (342aa)
GTPase Der n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z032_9RHIZ
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
engA; GTP-binding protein EngA; K03977 GTP-binding protein
Displaying 17 items

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