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scnpilot_solids2_trim150_scaffold_679_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_679_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..638)
DNA (636bp) protein (212aa)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:KFC72196.1}; EC=3.4.16.4 {ECO:0000313|EMBL:KFC72196.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Serine-type D-Ala-D-Ala carboxypeptidase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J0F5_RHOP2
scnpilot_solids2_trim150_scaffold_679_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

838..1740
DNA (903bp) protein (301aa)
EamA-like transporter family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMI1_9RHIZ
EamA-like transporter family {ECO:0000313|EMBL:EIM25173.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
DMT superfamily permease
scnpilot_solids2_trim150_scaffold_679_curated_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1840..3006
DNA (1167bp) protein (389aa)
PaaJ protein {ECO:0000313|EMBL:BAQ47994.1}; EC=2.3.1.9 {ECO:0000313|EMBL:BAQ47994.1};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
acetyl-CoA acetyltransferase (EC:2.3.1.176); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F1367A
scnpilot_solids2_trim150_scaffold_679_curated_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3138..4397
DNA (1260bp) protein (420aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IG24_METNO
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL61501.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_679_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4417..4680)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTR9_9BRAD
BolA family transcriptional regulator {ECO:0000313|EMBL:KIZ48086.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
BolA-like protein; K05527 BolA protein
scnpilot_solids2_trim150_scaffold_679_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4696..5403
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F41BAF
Heat shock protein DnaJ-like protein {ECO:0000313|EMBL:KFC72207.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
heat shock protein DnaJ domain-containing protein
scnpilot_solids2_trim150_scaffold_679_curated_7
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5485..6486
DNA (1002bp) protein (334aa)
cobalt chelatase small subunit; K09882 cobaltochelatase CobS [EC:6.6.1.2]
Cobalt chelatase, pCobS small subunit {ECO:0000313|EMBL:ABS67122.1}; EC=6.6.1.2 {ECO:0000313|EMBL:ABS67122.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Cobalt chelatase, pCobS small subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGH9_XANP2
scnpilot_solids2_trim150_scaffold_679_curated_8
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6652..8580
DNA (1929bp) protein (643aa)
cobalt chelatase large subunit (EC:6.6.1.2); K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobaltochelatase, CobT subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMH3_9RHIZ
Cobalt chelatase {ECO:0000313|EMBL:KFG66711.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_679_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8607..9632
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FAB92B
Uncharacterized protein {ECO:0000313|EMBL:KFC73240.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_679_curated_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9695..9982)
DNA (288bp) protein (96aa)
50S ribosomal protein L28 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=RL28_METS4
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_679_curated_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10230..11081
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003467060
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK85624.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
scnpilot_solids2_trim150_scaffold_679_curated_12
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11715..15029
DNA (3315bp) protein (1105aa)
Helicase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IR09_METNO
Helicase domain protein {ECO:0000313|EMBL:ACL56711.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
helicase domain-containing protein
scnpilot_solids2_trim150_scaffold_679_curated_13
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15026..15328
DNA (303bp) protein (101aa)
Heat shock protein, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUH9_RHOCS
tRNA synthetase RNA-binding protein {ECO:0000313|EMBL:ETX29279.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
heat shock protein; K04762 ribosome-associated heat shock protein Hsp15
scnpilot_solids2_trim150_scaffold_679_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15459..15794
DNA (336bp) protein (112aa)
4Fe-4S ferredoxin n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037DC443
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:KFC73235.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
4Fe-4S ferredoxin; K05524 ferredoxin
scnpilot_solids2_trim150_scaffold_679_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16197..16781
DNA (585bp) protein (195aa)
CarD family transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FB2117
Transcriptional regulator, CarD family {ECO:0000313|EMBL:KFC73234.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
scnpilot_solids2_trim150_scaffold_679_curated_16
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17004..17867
DNA (864bp) protein (288aa)
RNA polymerase sigma factor n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMG0_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
rpoH2; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
scnpilot_solids2_trim150_scaffold_679_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18112..19578)
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036B0483
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:ADH90964.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_679_curated_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19592..20413)
DNA (822bp) protein (274aa)
Nuclease (SNase domain protein) n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QUZ8_METTR
nuclease (SNase-like)
SNase-like nuclease {ECO:0000313|EMBL:ABD05264.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
scnpilot_solids2_trim150_scaffold_679_curated_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20540..21028)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPM5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25917.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_679_curated_20
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21197..22333
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D81355
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACK83097.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
scnpilot_solids2_trim150_scaffold_679_curated_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22423..23286
DNA (864bp) protein (288aa)
carboxymethylenebutenolidase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
carboxymethylenebutenolidase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036A0060
Carboxymethylenebutenolidase {ECO:0000313|EMBL:KGM33860.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids2_trim150_scaffold_679_curated_22
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23291..24073)
DNA (783bp) protein (261aa)
MOSC domain containing protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T8L4_BURPP
Uncharacterized protein {ECO:0000313|EMBL:KJC50599.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
MOSC domain-containing protein; K07140
scnpilot_solids2_trim150_scaffold_679_curated_23
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24095..24850)
DNA (756bp) protein (252aa)
3-oxoacyl-ACP reductase n=1 Tax=Rhizobium giardinii RepID=UPI0003711ED5
FabG protein {ECO:0000313|EMBL:BAQ46064.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
short-chain dehydrogenase/reductase
scnpilot_solids2_trim150_scaffold_679_curated_24
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24946..25992)
DNA (1047bp) protein (349aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2); K01843 lysine 2,3-aminomutase [EC:5.4.3.2]
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:ABY31392.1}; EC=5.4.3.2 {ECO:0000313|EMBL:ABY31392.1};; Flags: Precursor;; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W6W0_METEP
scnpilot_solids2_trim150_scaffold_679_curated_25
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25989..27155)
DNA (1167bp) protein (389aa)
Benzoate transporter n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IF95_XANP2
Benzoate transporter {ECO:0000313|EMBL:KFG71082.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
benzoate transporter; K05782 benzoate membrane transport protein
scnpilot_solids2_trim150_scaffold_679_curated_26
bacterium YEK0313, Bacteria

Not on your lists

comp(27155..28240)
DNA (1086bp) protein (362aa)
lysine--tRNA ligase (EC:6.1.1.6); K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SUL5_CAUSK
Elongation factor P--(R)-beta-lysine ligase {ECO:0000313|EMBL:CEJ15082.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Displaying 26 items

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