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scnpilot_solids2_trim150_scaffold_2550_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2550_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..625)
DNA (624bp) protein (208aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Rhizobium sp. CF080 RepID=J2KFV2_9RHIZ
scnpilot_solids2_trim150_scaffold_2550_curated_2
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

776..1699
DNA (924bp) protein (308aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthetase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0D6_MESOW
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:AEH84774.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids2_trim150_scaffold_2550_curated_3
bacterium YEK0313, Bacteria

Not on your lists

comp(1868..3169)
DNA (1302bp) protein (434aa)
RNA methyltransferase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
tRNA/rRNA cytosine-C5-methylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z025_9RHIZ
Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:CEJ12494.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_2550_curated_4
unknown

Not on your lists

3308..3475
DNA (168bp) protein (56aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2550_curated_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3525..4508)
DNA (984bp) protein (328aa)
alcohol dehydrogenase zinc-binding domain-containing protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJV4_METNO
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ACL59967.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_2550_curated_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4646..5542)
DNA (897bp) protein (299aa)
Putative acetyltransferase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U807_9RHIZ
Putative acetyltransferase protein {ECO:0000313|EMBL:ENN86383.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
GCN5-related N-acetyltransferase protein
scnpilot_solids2_trim150_scaffold_2550_curated_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..6517)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EECB56
Integral membrane protein TerC {ECO:0000313|EMBL:EJW11660.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
integral membrane protein TerC
scnpilot_solids2_trim150_scaffold_2550_curated_8
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6737..7747
DNA (1011bp) protein (337aa)
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X142_9RHIZ
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase {ECO:0000313|EMBL:EIZ86563.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
scnpilot_solids2_trim150_scaffold_2550_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7753..8718)
DNA (966bp) protein (322aa)
malonate transporter n=1 Tax=Xanthobacteraceae RepID=UPI000376E41A
auxin efflux carrier; K07088
Auxin Efflux Carrier {ECO:0000313|EMBL:ADH89006.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_2550_curated_10
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8872..9750
DNA (879bp) protein (293aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000376AE93
Lauroyl/myristoyl acyltransferase {ECO:0000313|EMBL:EAV43959.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
scnpilot_solids2_trim150_scaffold_2550_curated_11
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9936..10265
DNA (330bp) protein (110aa)
DNA-binding protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036FD90D
Hemimethylated DNA binding protein; K11940 heat shock protein HspQ
Hemimethylated DNA binding protein {ECO:0000313|EMBL:ADZ70663.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_2550_curated_12
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10351..11097)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030BCB30
Invasion associated locus B family protein {ECO:0000313|EMBL:AIQ89804.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
invasion associated locus B family protein
scnpilot_solids2_trim150_scaffold_2550_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11418..13187
DNA (1770bp) protein (590aa)
ABC-type oligopeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY77_9RHIZ
ABC-type oligopeptide transport system, periplasmic component {ECO:0000313|EMBL:EIM28919.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
extracellular solute-binding protein family 5
scnpilot_solids2_trim150_scaffold_2550_curated_14
unknown

Not on your lists

14031..14423
DNA (393bp) protein (131aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2550_curated_15
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14573..15787)
DNA (1215bp) protein (405aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7H0_RHOVT
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADP71889.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
scnpilot_solids2_trim150_scaffold_2550_curated_16
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15878..16633
DNA (756bp) protein (252aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7G9_RHOVT
AraC family transcriptional regulator {ECO:0000313|EMBL:KAI93303.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
AraC family transcriptional regulator
scnpilot_solids2_trim150_scaffold_2550_curated_17
bacterium YEK0313, Bacteria

Not on your lists

16784..17179
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MMX3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CEJ11943.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2550_curated_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17390..18148)
DNA (759bp) protein (253aa)
Putative nuleotide-utilizing enzyme, moeA n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNV3_9RHIZ
Putative nuleotide-utilizing enzyme, moeA {ECO:0000313|EMBL:EIM25645.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
molybdopterin binding domain-containing protein
scnpilot_solids2_trim150_scaffold_2550_curated_19
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18213..19052)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036F80F1
FkbM family methyltransferase
Methyltransferase FkbM family {ECO:0000313|EMBL:ACB78622.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_2550_curated_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19221..20054
DNA (834bp) protein (278aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Methionine aminopeptidase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ERG3_METSB
scnpilot_solids2_trim150_scaffold_2550_curated_21
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20054..20749
DNA (696bp) protein (232aa)
DNA repair protein RadC n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UGL5_METS4
DNA repair protein RadC; K03630 DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:ACA21007.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_2550_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20966..22996
DNA (2031bp) protein (677aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E07117
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:KFC67613.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
diguanylate cyclase/phosphodiesterase
scnpilot_solids2_trim150_scaffold_2550_curated_23
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23156..23683)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F06BEE
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:EIM25650.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
exopolysaccharide synthesis ExoD
scnpilot_solids2_trim150_scaffold_2550_curated_24
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23863..24132)
DNA (270bp) protein (90aa)
Usg family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U8V7_METS4
Usg family protein
Usg family protein {ECO:0000313|EMBL:ACA19768.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_2550_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24546..25154)
DNA (609bp) protein (203aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E5FEE7
Molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase {ECO:0000313|EMBL:KFC67616.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_2550_curated_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25151..25876)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N396_RHOPA
xanthine dehydrogenase accessory factor; K07402 xanthine dehydrogenase accessory factor
Uncharacterized protein {ECO:0000313|EMBL:CAE29239.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
scnpilot_solids2_trim150_scaffold_2550_curated_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25908..26261)
DNA (354bp) protein (118aa)
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU65_9RHIZ
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family {ECO:0000313|EMBL:EIM27507.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2550_curated_28
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26461..27684)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DC694F
Protein containing von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:EIM27500.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
IMP dehydrogenase; K07161
scnpilot_solids2_trim150_scaffold_2550_curated_29
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27694..28254)
DNA (561bp) protein (187aa)
MoxR-like ATPase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU59_9RHIZ
MoxR-like ATPase {ECO:0000313|EMBL:EIM27501.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ATPase
Displaying 29 items

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