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scnpilot_solids2_trim150_scaffold_855_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_855_curated_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1545
DNA (1545bp) protein (515aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
polyphosphate kinase; K00937 polyphosphate kinase [EC:2.7.4.1]
polyphosphate kinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030B9027
scnpilot_solids2_trim150_scaffold_855_curated_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1562..3064
DNA (1503bp) protein (501aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IK13_XANP2
Ppx/GppA phosphatase {ECO:0000313|EMBL:ABS68356.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_855_curated_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3305..4450)
DNA (1146bp) protein (382aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ribonuclease D (EC:3.1.13.5)
ribonuclease D n=1 Tax=Methylocystis parvus RepID=UPI00035C743D
scnpilot_solids2_trim150_scaffold_855_curated_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4517..5143)
DNA (627bp) protein (209aa)
putative glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG95_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33588.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
scnpilot_solids2_trim150_scaffold_855_curated_5
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5367..7136
DNA (1770bp) protein (590aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1
Aspartate--tRNA ligase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=SYD_BRASB
scnpilot_solids2_trim150_scaffold_855_curated_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7133..8236
DNA (1104bp) protein (368aa)
Glycosyl transferase, group 1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JI11_OLICO
glycosyl transferase
Putative glycosyl transferase {ECO:0000313|EMBL:AEI06700.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_855_curated_7
Loktanella sp. S4079, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8242..9300
DNA (1059bp) protein (353aa)
General stress protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AAI6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJZ19348.1}; TaxID=579483 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella sp. S4079.;"
glycosyl transferase family protein
scnpilot_solids2_trim150_scaffold_855_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9297..10382)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLE0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28345.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glycosyl transferase
scnpilot_solids2_trim150_scaffold_855_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10485..12767
DNA (2283bp) protein (761aa)
malic enzyme (EC:1.1.1.40 2.3.1.8); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DE3161
Malic enzyme {ECO:0000313|EMBL:EIM28497.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_855_curated_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12951..13295)
DNA (345bp) protein (115aa)
heme biosynthesis protein HemY n=1 Tax=Kaistia granuli RepID=UPI00037438E1
Probable iron binding protein from the HesB_IscA_SufA family {ECO:0000313|EMBL:CDO61228.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
HesB/YadR/YfhF
scnpilot_solids2_trim150_scaffold_855_curated_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13406..14641
DNA (1236bp) protein (412aa)
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1]
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YX08_9RHIZ
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_855_curated_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14693..16450
DNA (1758bp) protein (586aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YX09_9RHIZ
scnpilot_solids2_trim150_scaffold_855_curated_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16521..18020
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EC68C0
Uncharacterized protein {ECO:0000313|EMBL:KFG68780.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_855_curated_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18234..19250
DNA (1017bp) protein (339aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
glycosyl hydrolase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
Beta-glucosidase-like glycosyl hydrolase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YX11_9RHIZ
scnpilot_solids2_trim150_scaffold_855_curated_15
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19300..20091
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003634933
Chromosome segregation and condensation protein, ScpA
Chromosome segregation and condensation protein, ScpA {ECO:0000313|EMBL:CCJ05514.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids2_trim150_scaffold_855_curated_16
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20098..20853
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031C18F8
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
transcriptional regulator; K06024 segregation and condensation protein B
scnpilot_solids2_trim150_scaffold_855_curated_17
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20981..21217
DNA (237bp) protein (79aa)
Sec-independent protein translocase protein TatA n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=TATA_BEII9
tatA; twin arginine translocase protein A; K03116 sec-independent protein translocase protein TatA
Sec-independent protein translocase protein TatA {ECO:0000255|HAMAP-Rule:MF_00236}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
scnpilot_solids2_trim150_scaffold_855_curated_18
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21513..22289
DNA (777bp) protein (259aa)
Sec-independent protein translocase protein TatB n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5N8_9RHIZ
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
tatB; sec-independent translocase; K03117 sec-independent protein translocase protein TatB
scnpilot_solids2_trim150_scaffold_855_curated_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22286..23086
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031106C8
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Sec-independent periplasmic protein translocase; K03118 sec-independent protein translocase protein TatC
scnpilot_solids2_trim150_scaffold_855_curated_20
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23127..24362
DNA (1236bp) protein (412aa)
seryl-tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Serine--tRNA ligase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAL1_9RHIZ
Displaying 20 items

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