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scnpilot_solids2_trim150_scaffold_1605_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1605_curated_1
unknown

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comp(1..774)
DNA (774bp) protein (258aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1605_curated_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(771..2012)
DNA (1242bp) protein (414aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQH1_METS4
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACA17657.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1605_curated_3
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2192..2554)
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39ZC1_GEOMG
hypothetical protein
Uroporphyrin-III methyltransferase {ECO:0000313|EMBL:AJY69692.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
scnpilot_solids2_trim150_scaffold_1605_curated_4
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2551..3459)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI000370540E
LysR family transcriptional regulator HdfR {ECO:0000313|EMBL:BAQ16592.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
HTH-type transcriptional regulator
scnpilot_solids2_trim150_scaffold_1605_curated_5
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3659..4375
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00038229A9
Membrane associated transporter protein
Membrane associated transporter protein {ECO:0000313|EMBL:ACM34976.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
scnpilot_solids2_trim150_scaffold_1605_curated_6
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4372..5055
DNA (684bp) protein (228aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TAH3_9RHIZ
5-formyltetrahydrofolate cyclo-ligase
scnpilot_solids2_trim150_scaffold_1605_curated_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5128..5994)
DNA (867bp) protein (289aa)
cysA2; thiosulfate sulfurtransferase CysA (EC:2.8.1.1); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Thiosulfate sulfurtransferase CysA {ECO:0000313|EMBL:AEI08067.1}; EC=2.8.1.1 {ECO:0000313|EMBL:AEI08067.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Thiosulfate sulfurtransferase CysA n=2 Tax=Oligotropha carboxidovorans RepID=B6JCW4_OLICO
scnpilot_solids2_trim150_scaffold_1605_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6628..8508)
DNA (1881bp) protein (627aa)
Chaperone protein HtpG n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2A0_9RHIZ
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
heat shock protein 90; K04079 molecular chaperone HtpG
scnpilot_solids2_trim150_scaffold_1605_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8603..9538)
DNA (936bp) protein (312aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Azoarcus sp. (strain BH72) RepID=PANB_AZOSB
scnpilot_solids2_trim150_scaffold_1605_curated_10
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9993..10763)
DNA (771bp) protein (257aa)
LamB/YcsF family protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AAB5_RHIFH
LamB/YcsF family protein; K07160 UPF0271 protein
LamB/YcsF family protein {ECO:0000313|EMBL:CCE97019.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
scnpilot_solids2_trim150_scaffold_1605_curated_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(10849..12066)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037CE39C
aspartate aminotransferase
Aminotransferase {ECO:0000313|EMBL:BAH40754.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
scnpilot_solids2_trim150_scaffold_1605_curated_12
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12155..13102)
DNA (948bp) protein (316aa)
urea amidolyase-like protein (EC:6.3.4.6); K01941 urea carboxylase [EC:6.3.4.6]
Urea amidolyase-like protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S187_9BURK
Urea amidolyase-like protein {ECO:0000313|EMBL:EHP43700.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
scnpilot_solids2_trim150_scaffold_1605_curated_13
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13099..13884)
DNA (786bp) protein (262aa)
Allophanate hydrolase subunit 1 n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S188_9BURK
Allophanate hydrolase subunit 1 {ECO:0000313|EMBL:EHP43701.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
allophanate hydrolase subunit 1
scnpilot_solids2_trim150_scaffold_1605_curated_14
unknown

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comp(13881..13973)
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1605_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14222..14413)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AA799
Putative ornithine cyclodeaminase, mu-crystallin {ECO:0000313|EMBL:KFC66550.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Displaying 15 items

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